Doc updates for 0.24.0.

Author: jmchilton

HISTORY.rst

@@ -8,8 +8,16 @@ History
 ---------------------
 0.24.0.dev0
 ---------------------
-
 
+* Drop support for Python 2.6. 93b7bda_
+* A variety of fixes for ``shed_update``.
+  `Pull Request 428`_, `Issue 416`_
+* Fix reporting of metadata updates for invalid shed updates.
+  `Pull Request 426`_, `Issue 420`_
+* Check ``.shed.yml`` owner against credentials during shed creation.
+  `Pull Request 425`_, `Issue 246`_
+* Fix logic error if there is a problem with ``shed_create``. 358a42c_
+* Tool documentation improvements. 0298510_, a58a3b8_
 
 ---------------------
 0.23.0 (2016-02-15)
@@ -623,6 +631,16 @@ History
   tools - and more experimental features involving Docker and Homebrew. 7d07782_
 
 .. github_links
+.. _Issue 416: https://github.com/galaxyproject/planemo/issues/416
+.. _Pull Request 428: https://github.com/galaxyproject/planemo/pull/428
+.. _93b7bda: https://github.com/galaxyproject/planemo/commit/93b7bda
+.. _Pull Request 426: https://github.com/galaxyproject/planemo/pull/426
+.. _Issue 420: https://github.com/galaxyproject/planemo/issues/420
+.. _Issue 246: https://github.com/galaxyproject/planemo/issues/246
+.. _Pull Request 425: https://github.com/galaxyproject/planemo/pull/425
+.. _358a42c: https://github.com/galaxyproject/planemo/commit/358a42c
+.. _0298510: https://github.com/galaxyproject/planemo/commit/0298510
+.. _a58a3b8: https://github.com/galaxyproject/planemo/commit/a58a3b8
 .. _Pull Request 403: https://github.com/galaxyproject/planemo/pull/403
 .. _9f3957d: https://github.com/galaxyproject/planemo/commit/9f3957d
 .. _5e0b6d1: https://github.com/galaxyproject/planemo/commit/5e0b6d1

docs/planemo.commands.rst

@@ -28,6 +28,30 @@ planemo.commands.cmd_brew_init module
     :undoc-members:
     :show-inheritance:
 
+planemo.commands.cmd_conda_env module
+-------------------------------------
+
+.. automodule:: planemo.commands.cmd_conda_env
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+planemo.commands.cmd_conda_init module
+--------------------------------------
+
+.. automodule:: planemo.commands.cmd_conda_init
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+planemo.commands.cmd_conda_install module
+-----------------------------------------
+
+.. automodule:: planemo.commands.cmd_conda_install
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 planemo.commands.cmd_config_init module
 ---------------------------------------
 

docs/planemo.cwl.cwl2script.rst

@@ -0,0 +1,30 @@
+planemo.cwl.cwl2script package
+==============================
+
+Submodules
+----------
+
+planemo.cwl.cwl2script.cwl2script module
+----------------------------------------
+
+.. automodule:: planemo.cwl.cwl2script.cwl2script
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+planemo.cwl.cwl2script.setup module
+-----------------------------------
+
+.. automodule:: planemo.cwl.cwl2script.setup
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: planemo.cwl.cwl2script
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/planemo.cwl.rst

@@ -1,6 +1,13 @@
 planemo.cwl package
 ===================
 
+Subpackages
+-----------
+
+.. toctree::
+
+    planemo.cwl.cwl2script
+
 Submodules
 ----------
 

docs/planemo.rst

@@ -34,6 +34,14 @@ planemo.cli module
     :undoc-members:
     :show-inheritance:
 
+planemo.conda module
+--------------------
+
+.. automodule:: planemo.conda
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 planemo.config module
 ---------------------
 
@@ -42,6 +50,14 @@ planemo.config module
     :undoc-members:
     :show-inheritance:
 
+planemo.exit_codes module
+-------------------------
+
+.. automodule:: planemo.exit_codes
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 planemo.galaxy_config module
 ----------------------------
 

docs/planemo_ext.rst

@@ -1,14 +1,6 @@
 planemo_ext package
 ===================
 
-Subpackages
------------
-
-.. toctree::
-
-    planemo_ext.cwl2script
-    planemo_ext.galaxy
-
 Module contents
 ---------------