make-stoptags.py is checking for graphbase + '.ht'
infiles = [graphbase + '.ht', graphbase + '.tagset']
if args.stoptags:
infiles.append(args.stoptags)
for _ in infiles:
check_file_status(_)
...but loading graphbase + 'pt' (and printing ".ht").
print 'loading htable %s.ht' % graphbase
htable = khmer.load_hashbits(graphbase + '.pt')
make-stoptags.py is checking for
graphbase + '.ht'...but loading
graphbase + 'pt'(and printing ".ht").