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galaxy-tools

Some DeVL/GVL tools for Galaxy.

Standards

Tools should comply with the IUC standards

Specifically:

  • Indentation is correct (4 spaces)
  • Tool version/build ok
  • <command/>
    • Text parameters, input and output files 'single quoted'
    • Use of <![CDATA[ ... ]]> tags
    • Parameters of type text or having optional="true" attribute are checked with if str($param) before being used
  • Data parameters have a format attribute containing datatypes recognised by Galaxy
  • Tests
    • Parameters are reasonably covered
    • Test files are appropriate
  • Help
    • Valid restructuredText and uses <![CDATA[ ... ]]> tags