update count fields in schemas

remove category field from dataset schema

fixes #48

Author: dannda

src/api/dataset/content-types/dataset/schema.json

@@ -45,32 +45,18 @@
       "target": "api::study.study",
       "inversedBy": "datasets"
     },
-    "category": {
-      "type": "enumeration",
-      "enum": [
-        "scRNA-seq",
-        "CITE-seq",
-        "Smart-seq2",
-        "VDJ",
-        "Visium",
-        "Xenium",
-        "MERFISH"
-      ]
-    },
     "uid": {
       "type": "uid",
       "targetField": "dataset_id",
       "required": true
     },
+    "is_featured": {
+      "type": "boolean",
+      "default": false
+    },
     "metadata": {
       "type": "json"
     },
-    "experiments": {
-      "type": "relation",
-      "relation": "manyToMany",
-      "target": "api::experiment.experiment",
-      "inversedBy": "datasets"
-    },
     "data": {
       "type": "component",
       "repeatable": true,
@@ -100,6 +86,10 @@
     "count": {
       "type": "integer"
     },
+    "unit": {
+      "type": "string",
+      "default": "cell"
+    },
     "diseases": {
       "type": "customField",
       "options": {

src/api/dataset/controllers/dataset.js

@@ -33,7 +33,7 @@ module.exports = createCoreController('api::dataset.dataset', ({ strapi }) => ({
     ctx.query = {
       ...ctx.query,
       fields: [
-        'name', 'category', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count', 'description'
+        'name', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count', 'unit', 'description', 'is_featured'
       ],
       populate: {
         media: true,
@@ -55,7 +55,7 @@ module.exports = createCoreController('api::dataset.dataset', ({ strapi }) => ({
     ctx.query = {
       ...ctx.query,
       fields: [
-        'name', 'category', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count', 'description'
+        'name', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count', 'unit', 'description', 'is_featured'
       ],
       populate: {
         media: true,

src/api/study/content-types/study/schema.json

@@ -37,22 +37,11 @@
       "relation": "oneToMany",
       "target": "api::publication.publication"
     },
-    "analyses": {
-      "type": "relation",
-      "relation": "oneToMany",
-      "target": "api::analysis.analysis"
-    },
     "uid": {
       "type": "uid",
       "targetField": "study_id",
       "required": true
     },
-    "experiments": {
-      "type": "relation",
-      "relation": "oneToMany",
-      "target": "api::experiment.experiment",
-      "mappedBy": "study"
-    },
     "datasets": {
       "type": "relation",
       "relation": "oneToMany",
@@ -69,17 +58,11 @@
       "repeatable": true,
       "component": "contributions.people"
     },
-    "view_count": {
-      "type": "integer"
-    },
     "teams": {
       "type": "component",
       "repeatable": true,
       "component": "contributions.team"
     },
-    "cell_count": {
-      "type": "integer"
-    },
     "subtitle": {
       "type": "text"
     },

src/api/study/controllers/study.js

@@ -37,8 +37,6 @@ module.exports = createCoreController('api::study.study', ({ strapi }) => ({
         'subtitle',
         'createdAt',
         'updatedAt',
-        'view_count',
-        'cell_count',
       ],
       populate: {
         cover_image: true,
@@ -70,7 +68,7 @@ module.exports = createCoreController('api::study.study', ({ strapi }) => ({
           },
         },
         datasets: {
-          fields: ['name', 'description', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count'],
+          fields: ['name', 'description', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count', 'unit'],
           populate: ['media'],
         },
         resources: {
@@ -93,8 +91,6 @@ module.exports = createCoreController('api::study.study', ({ strapi }) => ({
         'subtitle',
         'createdAt',
         'updatedAt',
-        'view_count',
-        'cell_count',
       ],
       populate: {
         cover_image: true,
@@ -126,7 +122,7 @@ module.exports = createCoreController('api::study.study', ({ strapi }) => ({
           },
         },
         datasets: {
-          fields: ['name', 'description', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count'],
+          fields: ['name', 'description', 'tissues', 'organisms', 'assays', 'diseases', 'celltypes', 'human_developmental_stages', 'count', 'unit'],
           populate: ['media', 'data', 'resources'],
         },
         resources: true