main.yml

---
name: Build

on:
  repository_dispatch:
    types: [run_test_suite]
  push:
  pull_request:
  schedule:
    - cron: '0 0 * * 0'

jobs:
  build:
    runs-on: ubuntu-latest
    env:
      ms_suite: omero-ms-zarr-suite
      bf_suite: ome-zarr-bf2raw-suite
      zarr_suite: ome-zarr-py-suite
    steps:
      - uses: actions/checkout@v2
      - name: Setup miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          channels: conda-forge,ome
          environment-file: environment.yml
          python-version: 3.9
      - name: Set testing environment
        if: github.event.action == 'run_test_suite'
        shell: bash
        run: |
          # Set the parameters to be used in the response
          repo=${{ github.event.client_payload.repo }}
          owner=${{ github.event.client_payload.owner }}
          ref=${{ github.event.client_payload.ref }}
          sha=${{ github.event.client_payload.sha }}
          number=${{ github.event.client_payload.number }}
          repo_name=${repo#"$owner"}
          repo_name=${repo_name#"/"}
          echo "client_repo="$repo >> $GITHUB_ENV
          echo "client_repo_name="$repo_name >> $GITHUB_ENV
          echo "client_owner="$owner >> $GITHUB_ENV
          echo "client_ref="$ref >> $GITHUB_ENV
          echo "client_sha="$sha >> $GITHUB_ENV
          echo "client_number="$number >> $GITHUB_ENV

          # Checkout the sha from the specified repository.
          # Only run the tests matching the specified repository.
          if [[ $repo =~ 'omero-ms-zarr' ]]; then
            git clone git://github.com/$repo ${{env.ms_suite}}
            cd ${{env.ms_suite}}
            git checkout ${{ github.event.client_payload.sha }}
            cd ..
            python configure_test.py omero_ms_zarr
          elif [[ $repo =~ 'bioformats2raw' ]]; then
            git clone git://github.com/$repo ${{env.bf_suite}}
            cd ${{env.bf_suite}}
            git checkout ${{ github.event.client_payload.sha }}
            cd ..
            python configure_test.py bioformats2raw
          elif [[ $repo =~ 'ome-zarr-py' ]]; then
            conda activate test
            git clone git://github.com/$repo ${{env.zarr_suite}}
            cd ${{env.zarr_suite}}
            git checkout ${{ github.event.client_payload.sha }}
            pip install -e .
            cd ..
            conda deactivate
            python configure_test.py ome_zarr
          fi
      - name: Run pytest
        shell: bash -l {0}
        run: pytest -vxk "not omero"
      # yamllint disable rule:line-length
      - name: Notify job status on PR
        if: always() && github.event.action == 'run_test_suite'
        uses: actions/github-script@v3
        with:
          github-token: ${{secrets.API_TOKEN_GITHUB}}
          script: |
            github.issues.createComment({
              issue_number: "${{env.client_number}}",
              owner: "${{env.client_owner}}",
              repo: "${{env.client_repo_name}}",
              body: 'https://github.com/${{github.repository}}/actions/runs/${{github.run_id}}: ${{ job.status }}'
            })
      - name: Create issue
        if: failure() && github.event.action == 'run_test_suite'
        run: |
          curl -X "POST" "https://api.github.com/repos/ome/${{env.client_repo_name}}/issues?state=all" \
               -H "Cookie: logged_in=no" \
               -H "Authorization: token ${{secrets.API_TOKEN_GITHUB}}" \
               -H "Content-Type: text/plain; charset=utf-8" \
               -d $'{
                 "title": "Test suite failure for PR #${{env.client_number}}",
                 "body": "Test suite status: ${{ job.status }} see https://github.com/${{github.repository}}/actions/runs/${{github.run_id}}",
                 "labels": [
                   "bug"
                 ]
                 }'