missing = sign

maxibor · maxibor · commit e07e7b5781a4 · 2020-12-10T13:35:33.000+01:00
diff --git a/main.nf b/main.nf
@@ -2443,7 +2443,7 @@ process qualimap {
     script:
     def snpcap = params.snpcapture_bed != '' ? "-gff ${params.snpcapture_bed}" : ''
     """
-    qualimap bamqc -bam $bam -nt ${task.cpus} -outdir . -outformat "HTML" ${snpcap} --java-mem-size ${task.memory.toGiga()}G
+    qualimap bamqc -bam $bam -nt ${task.cpus} -outdir . -outformat "HTML" ${snpcap} --java-mem-size=${task.memory.toGiga()}G
     """
 }
 

Original file line number	Diff line number	Diff line change
`@@ -2443,7 +2443,7 @@ process qualimap {`
`2443`	`2443`	`script:`
`2444`	`2444`	`def snpcap = params.snpcapture_bed != '' ? "-gff ${params.snpcapture_bed}" : ''`
`2445`	`2445`	`"""`
`2446`		`- qualimap bamqc -bam $bam -nt ${task.cpus} -outdir . -outformat "HTML" ${snpcap} --java-mem-size ${task.memory.toGiga()}G`
	`2446`	`+ qualimap bamqc -bam $bam -nt ${task.cpus} -outdir . -outformat "HTML" ${snpcap} --java-mem-size=${task.memory.toGiga()}G`
`2447`	`2447`	`"""`
`2448`	`2448`	`}`
`2449`	`2449`