Skip to content

Commit a09c828

Browse files
Render toc-less
1 parent 0443a93 commit a09c828

15 files changed

+58
-58
lines changed

docs/no_toc/404.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Page not found | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Page not found | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />

docs/no_toc/About.md

Lines changed: 16 additions & 16 deletions
Original file line numberDiff line numberDiff line change
@@ -53,21 +53,21 @@ These credits are based on our [course contributors table guidelines](https://gi
5353
## collate en_US.UTF-8
5454
## ctype en_US.UTF-8
5555
## tz Etc/UTC
56-
## date 2025-10-21
56+
## date 2026-01-14
5757
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
5858
##
5959
## ─ Packages ───────────────────────────────────────────────────────────────────
6060
## package * version date (UTC) lib source
61-
## bookdown 0.43 2025-04-15 [1] CRAN (R 4.3.2)
61+
## bookdown 0.46 2025-12-05 [1] CRAN (R 4.3.2)
6262
## bslib 0.6.1 2023-11-28 [1] RSPM (R 4.3.0)
6363
## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
6464
## chromote 0.5.1 2025-04-24 [1] CRAN (R 4.3.2)
65-
## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0)
65+
## cli 3.6.5 2025-04-23 [1] CRAN (R 4.3.2)
6666
## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
6767
## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0)
6868
## dplyr 1.1.4 2023-11-17 [1] RSPM (R 4.3.0)
6969
## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0)
70-
## evaluate 1.0.4 2025-06-18 [1] CRAN (R 4.3.2)
70+
## evaluate 1.0.5 2025-08-27 [1] CRAN (R 4.3.2)
7171
## fansi 1.0.6 2023-12-08 [1] RSPM (R 4.3.0)
7272
## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
7373
## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0)
@@ -80,36 +80,36 @@ These credits are based on our [course contributors table guidelines](https://gi
8080
## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0)
8181
## httr 1.4.7 2023-08-15 [1] RSPM (R 4.3.0)
8282
## jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0)
83-
## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0)
83+
## jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.3.2)
8484
## knitr 1.50 2025-03-16 [1] CRAN (R 4.3.2)
8585
## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0)
8686
## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0)
8787
## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
8888
## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
8989
## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0)
9090
## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0)
91-
## ottrpal 2.0.0 2025-08-11 [1] Github (ottrproject/ottrpal@a9049b7)
91+
## ottrpal 2.0.0 2025-12-16 [1] Github (ottrproject/ottrpal@6d1267e)
9292
## pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0)
9393
## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0)
9494
## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0)
95-
## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0)
96-
## processx 3.8.3 2023-12-10 [1] RSPM (R 4.3.0)
95+
## pkgload 1.4.1 2025-09-23 [1] CRAN (R 4.3.2)
96+
## processx 3.8.6 2025-02-21 [1] CRAN (R 4.3.2)
9797
## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0)
9898
## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0)
99-
## ps 1.7.6 2024-01-18 [1] RSPM (R 4.3.0)
99+
## ps 1.9.1 2025-04-12 [1] CRAN (R 4.3.2)
100100
## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0)
101-
## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
101+
## R6 2.6.1 2025-02-15 [1] CRAN (R 4.3.2)
102102
## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0)
103103
## readr 2.1.5 2024-01-10 [1] RSPM (R 4.3.0)
104104
## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
105105
## rlang 1.1.6 2025-04-11 [1] CRAN (R 4.3.2)
106106
## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0)
107-
## rprojroot 2.1.0 2025-07-12 [1] CRAN (R 4.3.2)
108-
## rvest 1.0.4 2024-02-12 [1] CRAN (R 4.3.2)
107+
## rprojroot 2.1.1 2025-08-26 [1] CRAN (R 4.3.2)
108+
## rvest 1.0.5 2025-08-29 [1] CRAN (R 4.3.2)
109109
## sass 0.4.8 2023-12-06 [1] RSPM (R 4.3.0)
110110
## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
111111
## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0)
112-
## spelling 2.3.1 2024-10-04 [1] CRAN (R 4.3.2)
112+
## spelling 2.3.2 2025-08-18 [1] CRAN (R 4.3.2)
113113
## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0)
114114
## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0)
115115
## tibble 3.3.0 2025-06-08 [1] CRAN (R 4.3.2)
@@ -122,10 +122,10 @@ These credits are based on our [course contributors table guidelines](https://gi
122122
## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0)
123123
## webshot2 0.1.2 2025-04-23 [1] CRAN (R 4.3.2)
124124
## websocket 1.4.4 2025-04-10 [1] CRAN (R 4.3.2)
125-
## xfun 0.52 2025-04-02 [1] CRAN (R 4.3.2)
126-
## xml2 1.3.6 2023-12-04 [1] RSPM (R 4.3.0)
125+
## xfun 0.55 2025-12-16 [1] CRAN (R 4.3.2)
126+
## xml2 1.5.1 2025-12-01 [1] CRAN (R 4.3.2)
127127
## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
128-
## yaml 2.3.10 2024-07-26 [1] CRAN (R 4.3.2)
128+
## yaml 2.3.12 2025-12-10 [1] CRAN (R 4.3.2)
129129
##
130130
## [1] /usr/local/lib/R/site-library
131131
## [2] /usr/local/lib/R/library

docs/no_toc/about-the-authors.html

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>About the Authors | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="About the Authors | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />
@@ -406,21 +406,21 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
406406
## collate en_US.UTF-8
407407
## ctype en_US.UTF-8
408408
## tz Etc/UTC
409-
## date 2025-10-21
409+
## date 2026-01-14
410410
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
411411
##
412412
## ─ Packages ───────────────────────────────────────────────────────────────────
413413
## package * version date (UTC) lib source
414-
## bookdown 0.43 2025-04-15 [1] CRAN (R 4.3.2)
414+
## bookdown 0.46 2025-12-05 [1] CRAN (R 4.3.2)
415415
## bslib 0.6.1 2023-11-28 [1] RSPM (R 4.3.0)
416416
## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
417417
## chromote 0.5.1 2025-04-24 [1] CRAN (R 4.3.2)
418-
## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0)
418+
## cli 3.6.5 2025-04-23 [1] CRAN (R 4.3.2)
419419
## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
420420
## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0)
421421
## dplyr 1.1.4 2023-11-17 [1] RSPM (R 4.3.0)
422422
## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0)
423-
## evaluate 1.0.4 2025-06-18 [1] CRAN (R 4.3.2)
423+
## evaluate 1.0.5 2025-08-27 [1] CRAN (R 4.3.2)
424424
## fansi 1.0.6 2023-12-08 [1] RSPM (R 4.3.0)
425425
## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
426426
## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0)
@@ -433,36 +433,36 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
433433
## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0)
434434
## httr 1.4.7 2023-08-15 [1] RSPM (R 4.3.0)
435435
## jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0)
436-
## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0)
436+
## jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.3.2)
437437
## knitr 1.50 2025-03-16 [1] CRAN (R 4.3.2)
438438
## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0)
439439
## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0)
440440
## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
441441
## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
442442
## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0)
443443
## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0)
444-
## ottrpal 2.0.0 2025-08-11 [1] Github (ottrproject/ottrpal@a9049b7)
444+
## ottrpal 2.0.0 2025-12-16 [1] Github (ottrproject/ottrpal@6d1267e)
445445
## pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0)
446446
## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0)
447447
## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0)
448-
## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0)
449-
## processx 3.8.3 2023-12-10 [1] RSPM (R 4.3.0)
448+
## pkgload 1.4.1 2025-09-23 [1] CRAN (R 4.3.2)
449+
## processx 3.8.6 2025-02-21 [1] CRAN (R 4.3.2)
450450
## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0)
451451
## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0)
452-
## ps 1.7.6 2024-01-18 [1] RSPM (R 4.3.0)
452+
## ps 1.9.1 2025-04-12 [1] CRAN (R 4.3.2)
453453
## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0)
454-
## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
454+
## R6 2.6.1 2025-02-15 [1] CRAN (R 4.3.2)
455455
## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0)
456456
## readr 2.1.5 2024-01-10 [1] RSPM (R 4.3.0)
457457
## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
458458
## rlang 1.1.6 2025-04-11 [1] CRAN (R 4.3.2)
459459
## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0)
460-
## rprojroot 2.1.0 2025-07-12 [1] CRAN (R 4.3.2)
461-
## rvest 1.0.4 2024-02-12 [1] CRAN (R 4.3.2)
460+
## rprojroot 2.1.1 2025-08-26 [1] CRAN (R 4.3.2)
461+
## rvest 1.0.5 2025-08-29 [1] CRAN (R 4.3.2)
462462
## sass 0.4.8 2023-12-06 [1] RSPM (R 4.3.0)
463463
## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
464464
## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0)
465-
## spelling 2.3.1 2024-10-04 [1] CRAN (R 4.3.2)
465+
## spelling 2.3.2 2025-08-18 [1] CRAN (R 4.3.2)
466466
## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0)
467467
## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0)
468468
## tibble 3.3.0 2025-06-08 [1] CRAN (R 4.3.2)
@@ -475,10 +475,10 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
475475
## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0)
476476
## webshot2 0.1.2 2025-04-23 [1] CRAN (R 4.3.2)
477477
## websocket 1.4.4 2025-04-10 [1] CRAN (R 4.3.2)
478-
## xfun 0.52 2025-04-02 [1] CRAN (R 4.3.2)
479-
## xml2 1.3.6 2023-12-04 [1] RSPM (R 4.3.0)
478+
## xfun 0.55 2025-12-16 [1] CRAN (R 4.3.2)
479+
## xml2 1.5.1 2025-12-01 [1] CRAN (R 4.3.2)
480480
## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
481-
## yaml 2.3.10 2024-07-26 [1] CRAN (R 4.3.2)
481+
## yaml 2.3.12 2025-12-10 [1] CRAN (R 4.3.2)
482482
##
483483
## [1] /usr/local/lib/R/site-library
484484
## [2] /usr/local/lib/R/library

docs/no_toc/basic-building-block-of-computers.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Chapter 2 Basic Building Block of Computers | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Chapter 2 Basic Building Block of Computers | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />

docs/no_toc/binary-data-to-computations.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Chapter 3 Binary Data to Computations | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Chapter 3 Binary Data to Computations | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />

docs/no_toc/computing-resource-decisions.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Chapter 7 Computing Resource Decisions | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Chapter 7 Computing Resource Decisions | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />

docs/no_toc/computing-resources.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Chapter 4 Computing Resources | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Chapter 4 Computing Resources | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />

docs/no_toc/index.html

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />
@@ -280,7 +280,7 @@ <h1>
280280
</div>
281281
<div id="header">
282282
<h1 class="title">Computing for Cancer Informatics</h1>
283-
<p class="date"><em>2025-10-21</em></p>
283+
<p class="date"><em>2026-01-14</em></p>
284284
</div>
285285
<div id="about-this-course" class="section level1 unnumbered hasAnchor">
286286
<h1>About This Course<a href="index.html#about-this-course" class="anchor-section" aria-label="Anchor link to header"></a></h1>

docs/no_toc/index.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
---
22
title: "Computing for Cancer Informatics"
3-
date: "2025-10-21"
3+
date: "2026-01-14"
44
site: bookdown::bookdown_site
55
documentclass: book
66
bibliography: [book.bib, packages.bib]

docs/no_toc/introduction.html

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
77
<title>Chapter 1 Introduction | Computing for Cancer Informatics</title>
88
<meta name="description" content="This course covers material about economic, privacy, security, usability, and discoverability aspects of data management for cancer research." />
9-
<meta name="generator" content="bookdown 0.43 and GitBook 2.6.7" />
9+
<meta name="generator" content="bookdown 0.46 and GitBook 2.6.7" />
1010

1111
<meta property="og:title" content="Chapter 1 Introduction | Computing for Cancer Informatics" />
1212
<meta property="og:type" content="book" />
@@ -22,7 +22,7 @@
2222

2323

2424

25-
<meta name="date" content="2025-10-21" />
25+
<meta name="date" content="2026-01-14" />
2626

2727
<meta name="viewport" content="width=device-width, initial-scale=1" />
2828
<meta name="apple-mobile-web-app-capable" content="yes" />

0 commit comments

Comments
 (0)