From 9d22d4c9a09db96b0c5fe46dc6a823f228cea70d Mon Sep 17 00:00:00 2001 From: Carrie Wright <23014755+carriewright11@users.noreply.github.com> Date: Wed, 14 Jan 2026 12:07:13 -0500 Subject: [PATCH 1/5] Fix duplicate text in Motivation section added arbitrary change to trigger checks --- 01-intro.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/01-intro.Rmd b/01-intro.Rmd index d16b845d..89efcb8a 100644 --- a/01-intro.Rmd +++ b/01-intro.Rmd @@ -14,7 +14,7 @@ ottrpal::include_slide("https://docs.google.com/presentation/d/1B4LwuvgA6aUopOHE ## Motivation -One of the key challenges in cancer informatics is dealing with and managing the explosion of large data from multiple sources that are often too large to work with on typical personal computers. This course is designed to help researchers and investigators understand the basics of computing and to familiarize them with various computing options, ultimately helping their research decisions. +One of the key challenges in cancer informatics is dealing with and managing the explosion of large data from multiple sources that are often too large to work with on typical personal computers. This course is designed to help researchers and investigators understand the basics of computing and to familiarize them with various computing options, ultimately helping their research decisions. ## Target Audience From 68dda4f7155191e2bbfa23b38ac7eaa5149a7b73 Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 11:34:17 -0700 Subject: [PATCH 2/5] adding getting started.. might be useful to have around --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index dc638bee..1ec540cd 100644 --- a/.gitignore +++ b/.gitignore @@ -8,3 +8,4 @@ spell_check_results.tsv .RData .httr-oauth docker/git_token.txt +getting_started.md \ No newline at end of file From 47bbb4d6233e4dec9ab5ea243d5f3301d4a4665d Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 11:35:12 -0700 Subject: [PATCH 3/5] adding ignore urls --- resources/ignore-urls.txt | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/resources/ignore-urls.txt b/resources/ignore-urls.txt index 80ff5610..77bf2d2e 100644 --- a/resources/ignore-urls.txt +++ b/resources/ignore-urls.txt @@ -1 +1,4 @@ -https://en.wikipedia.org/wiki/Adder_\(electronics +https://en.wikipedia.org/wiki/Adder_\(electronics) +https://en.wikipedia.org/wiki/Adder_(electronics +https://en.wikipedia.org/wiki/Adder_(electronics) +https://support.apple.com/en-ie/guide/mac-help/mchlf375f392/mac From 7965a4b48e77b3707bc70a17699a5bb5b68372dc Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 11:36:58 -0700 Subject: [PATCH 4/5] ignore getting started for spelling too --- resources/exclude_files.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/resources/exclude_files.txt b/resources/exclude_files.txt index 5525a403..22c440e5 100644 --- a/resources/exclude_files.txt +++ b/resources/exclude_files.txt @@ -6,3 +6,4 @@ CONTRIBUTING.md LICENSE.md code_of_conduct.md README.md +getting_started.md From 56edd2fd4aaa855b86148dabe1ba4de853afc7dc Mon Sep 17 00:00:00 2001 From: carriewright11 Date: Wed, 14 Jan 2026 11:42:29 -0700 Subject: [PATCH 5/5] adding 2 acceptable errors to url checker --- config_automation.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config_automation.yml b/config_automation.yml index 3c7941e6..e8e33415 100644 --- a/config_automation.yml +++ b/config_automation.yml @@ -8,7 +8,7 @@ check-quizzes: false quiz_error_min: 0 # Check that urls in the content are not broken url-checker: true -url_error_min: 0 +url_error_min: 2 # Spell check Rmds and quizzes spell-check: true spell_error_min: 0