dna-sequence-data-handling/pyproject.toml at develop · jvirico/dna-sequence-data-handling · GitHub

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[tool.poetry]
name = "dna-sequence-data-handling"
version = "0.1.0"
description = "Testing python libraries for bioinformatics"
authors = ["Javier Rico <jvirico@gmail.com>"]
license = "MIT License"

[tool.poetry.dependencies]
python = "^3.9"
biopython = "^1.79"
squiggle = {git = "https://github.com/Benjamin-Lee/squiggle.git"}
typer = "^0.6.1"
scikit-learn = "^1.1.2"

[tool.poetry.dev-dependencies]
isort = "^5.10.1"
flake8 = "^5.0.4"
mypy = "^0.971"
pytest = "^7.1.2"
black = "^22.6.0"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.black]
line-length = 120
target-version = ["py39"]

[tool.isort]
profile = "black"
line_length = 120
skip_gitignore = true

[tool.mypy]
python_version = 3.8
# uncomment if using (older) NumPy version
# plugins = "numpy.typing.mypy_plugin"
namespace_packages = true
ignore_missing_imports = true
show_error_codes = true
show_column_numbers = true
disallow_any_generics = true
disallow_incomplete_defs = true
disallow_untyped_defs = true
local_partial_types = true
follow_imports = "silent"
warn_redundant_casts = true
warn_unused_ignores = true
warn_unreachable = true
ignore_errors = false