fixed phred score #140
lskatzbenchmark.yml
on: push
Matrix: build_and_cache_conda
Discover benchmark scripts
5s
Matrix: build_and_test
Matrix: aggregate
Annotations
24 warnings
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Set up conda for benchmarking - 3.10 on ubuntu-latest
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Set up conda for benchmarking - 3.10 on ubuntu-latest
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Artifacts
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benchmark-results.ubuntu-latest.3.10.ALL
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sha256:48d93554a2e0a86e82f7b4dae5557dca85d276b3a5dcbc358703a25d9e1258aa
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benchmark-results.ubuntu-latest.3.10.benchmark_clean
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35.4 KB |
sha256:1f44e2ee928e9ec5f16564e6cdb029995fdf18df1286c4e56e0dc9e665b3a9a7
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benchmark-results.ubuntu-latest.3.10.benchmark_convert
Expired
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65.6 KB |
sha256:f01d031aa2210e16d2c63bfbc67f3e73faac4dd7b80d46a52aedce814a7de192
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benchmark-results.ubuntu-latest.3.10.benchmark_head
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70.6 KB |
sha256:3aa4df721e24f9530cd0c1aabe1253580b5631caadb011eff2e5b68148edade8
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benchmark-results.ubuntu-latest.3.10.benchmark_interleave
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59.7 KB |
sha256:9f6bb6711568e6e32563a6682260579233cfb1bbae104872881ca63a724dac2b
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benchmark-results.ubuntu-latest.3.10.benchmark_kmer
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sha256:2f54839f7e95dd9db6597f377dd5aef3fc9dc14159e46e24e7839f568f928a2b
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benchmark-results.ubuntu-latest.3.10.benchmark_normalize
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sha256:8f2bd184c54181e7025f2c5faf265e1dabf2ba0f8c312b1e767fa685b44326fc
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benchmark-results.ubuntu-latest.3.10.benchmark_progress-meter
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sha256:ab325c2b93000148592daa5030454564ea6a8c833b88634a09a81065a2d57a26
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benchmark-results.ubuntu-latest.3.10.benchmark_regex
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sha256:8e7947ea78be72a4ff02c16112f0a3166dd9f3ee0dc4224eed3770ceaa5f5c73
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benchmark-results.ubuntu-latest.3.10.benchmark_sample
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sha256:903812a4555473121b8c4a1f76358a4e24436878c850441bd3e7d60aa87908f5
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benchmark-results.ubuntu-latest.3.10.benchmark_sort
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sha256:2c20715d23926955f6756442dde8ced251af936fe16a504057551ff4208da444
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benchmark-results.ubuntu-latest.3.10.benchmark_trim
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44.2 KB |
sha256:86c5811d3d0bbb94eb50d0881973bd51651d93ca798a5949e4fdfbd6303fc5d3
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