fixed test for phred score #141
lskatzbenchmark.yml
on: push
Matrix: build_and_cache_conda
Discover benchmark scripts
6s
Matrix: build_and_test
Matrix: aggregate
Annotations
24 warnings
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Set up conda for benchmarking - 3.10 on ubuntu-latest
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Set up conda for benchmarking - 3.10 on ubuntu-latest
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Artifacts
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benchmark-results.ubuntu-latest.3.10.ALL
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sha256:31939c7605b5bf711bf3a1346738fb694c6c172016526a90f3f17fbb2657d6f3
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benchmark-results.ubuntu-latest.3.10.benchmark_clean
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sha256:2a803cd1fcc9e39223cc1b988fbc90709c51eb7a8c75a5e84c9bd323f8c0d1b6
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benchmark-results.ubuntu-latest.3.10.benchmark_convert
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72.1 KB |
sha256:4e42987290d94a1348643c9fb782fdc8bdd07e3508b4a18bc75aa0ed7f40d642
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benchmark-results.ubuntu-latest.3.10.benchmark_head
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70 KB |
sha256:de940d709e35caadde6e5803309d2c26ad2e9391dfd3708c8f33eb5b9f8b2e59
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benchmark-results.ubuntu-latest.3.10.benchmark_interleave
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sha256:b4bf0e1636a1e102518ded50f79ca27d0402f72d55b4e2e0891fb2b72b70d153
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benchmark-results.ubuntu-latest.3.10.benchmark_kmer
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sha256:c97ad7b1394d638a8e26e11ce25ba50169c74c45a30795353b92f1d6507debab
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benchmark-results.ubuntu-latest.3.10.benchmark_normalize
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benchmark-results.ubuntu-latest.3.10.benchmark_progress-meter
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benchmark-results.ubuntu-latest.3.10.benchmark_regex
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benchmark-results.ubuntu-latest.3.10.benchmark_sample
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benchmark-results.ubuntu-latest.3.10.benchmark_sort
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sha256:9f5c99b0bd7654adb5b39e3ad56e96824cedd6c43377c2243bf858526a913edc
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benchmark-results.ubuntu-latest.3.10.benchmark_trim
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42.9 KB |
sha256:91c041aea452c3cca5f5737b9b52df84aaced5d93ca3c700962bcfba04e3a989
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