updated answers for corrected phred scores #142
lskatzbenchmark.yml
on: push
Matrix: build_and_cache_conda
Discover benchmark scripts
4s
Matrix: build_and_test
Matrix: aggregate
Annotations
24 warnings
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Set up conda for benchmarking - 3.10 on ubuntu-latest
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Set up conda for benchmarking - 3.10 on ubuntu-latest
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Artifacts
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benchmark-results.ubuntu-latest.3.10.ALL
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benchmark-results.ubuntu-latest.3.10.benchmark_clean
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sha256:9419e999a14f3b3a75b3a999d24c6b51dfd32c3ea36fed8c6e4624b39e081c86
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benchmark-results.ubuntu-latest.3.10.benchmark_convert
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benchmark-results.ubuntu-latest.3.10.benchmark_head
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benchmark-results.ubuntu-latest.3.10.benchmark_interleave
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benchmark-results.ubuntu-latest.3.10.benchmark_kmer
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benchmark-results.ubuntu-latest.3.10.benchmark_regex
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benchmark-results.ubuntu-latest.3.10.benchmark_sample
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benchmark-results.ubuntu-latest.3.10.benchmark_sort
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benchmark-results.ubuntu-latest.3.10.benchmark_trim
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