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more carefully-thought out flags #149

more carefully-thought out flags

more carefully-thought out flags #149

Triggered via push October 24, 2025 21:01
Status Failure
Total duration 6m 47s
Artifacts

benchmark.yml

on: push
Matrix: build_and_cache_conda
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7s
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Matrix: build_and_test
Matrix: aggregate
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72 errors and 26 warnings
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_metrics.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_metrics.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_metrics.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_metrics.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
expected `;`, found keyword `let`
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
expected `;`, found keyword `let`
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
expected `;`, found keyword `let`
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
variable does not need to be mutable
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
expected `;`, found keyword `let`
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
Process completed with exit code 101.
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
temporary value dropped while borrowed
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
temporary value dropped while borrowed
Set up conda for benchmarking - 3.10 on ubuntu-latest
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Set up conda for benchmarking - 3.10 on ubuntu-latest
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_convert.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sample.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_clean.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_metrics.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_metrics.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_kmer.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_regex.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_sort.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_progress-meter.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_trim.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_head.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_interleave.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Benchmark with python 3.10 and ubuntu-latest — fasten/tests/benchmark_normalize.sh
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(