Merge pull request #714 from macs3-project/doc/macs3/3.0.4

Doc/macs3/3.0.4

Author: taoliu

.github/workflows/publish-to-gh-with-sphinx.yml

@@ -32,7 +32,7 @@ jobs:
     - name: Install dependencies
       run: |
         python3 -m pip install --upgrade pip
-        python3 -m pip install sphinx myst-parser sphinx-rtd-theme # Add other dependencies you might have
+        python3 -m pip install sphinx myst-parser sphinx-rtd-theme sphinx-rtd-theme  sphinx-autodoc-typehints # Add other dependencies you might have
 
     - name: Build Sphinx Documentation
       run: |

ChangeLog

@@ -1,4 +1,4 @@
-2025-07-25  Tao Liu  <vladimir.liu@gmail.com>
+2025-10-30  Tao Liu  <vladimir.liu@gmail.com>
 	MACS 3.0.4
 
 	* Features added
@@ -32,6 +32,14 @@
 	`PETrackII.sample_percent*`, preserving existing CLI behaviour for
 	scenarios where a balance target contains no fragments.
 
+	3) In some cases, overflow error may be triggered in PETrackI
+	while chaning the total length of the track. Now we explicitly
+	`cast` the int32 value to ulonglong to avoid such error.
+
+	* Other
+
+	1) Cleanup of docstrings in source code and provide API documents.
+
 2025-02-19  Tao Liu  <vladimir.liu@gmail.com>
 	MACS 3.0.3