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environment.yml
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194 lines (194 loc) · 6.43 KB
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name: T1G1_final_assembly
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _sysroot_linux-64_curr_repodata_hack=3=h5bd9786_13
- bbmap=38.95=he522d1c_0
- blast=2.12.0=h3289130_3
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- brotlipy=0.7.0=py37h5e8e339_1003
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- certifi=2021.10.8=py37h89c1867_1
- cffi=1.15.0=py37h036bc23_0
- charset-normalizer=2.0.12=pyhd8ed1ab_0
- circos=0.69.8=hdfd78af_1
- click=8.0.4=py37h89c1867_0
- colorama=0.4.4=pyh9f0ad1d_0
- coloredlogs=15.0.1=pyhd8ed1ab_3
- colormath=3.0.0=py_2
- commonmark=0.9.1=py_0
- cryptography=36.0.0=py37h9ce1e76_0
- curl=7.81.0=h494985f_0
- cycler=0.11.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- decorator=4.4.2=py_0
- entrez-direct=16.2=he881be0_0
- expat=2.4.4=h9c3ff4c_0
- fastqc=0.11.9=hdfd78af_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.96=ha180cfb_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.29.1=py37h5e8e339_0
- freetype=2.10.4=h0708190_1
- future=0.18.2=py37h89c1867_4
- giflib=5.2.1=h36c2ea0_2
- glimmerhmm=3.0.4=h2d50403_2
- humanfriendly=10.0=py37h89c1867_2
- icu=69.1=h9c3ff4c_0
- idna=3.3=pyhd8ed1ab_0
- importlib-metadata=4.11.1=py37h89c1867_0
- jbig=2.1=h7f98852_2003
- jinja2=3.0.3=pyhd8ed1ab_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9e=h7f98852_0
- k8=0.2.5=h9a82719_1
- kernel-headers_linux-64=3.10.0=h4a8ded7_13
- kiwisolver=1.3.2=py37h2527ec5_1
- krb5=1.19.2=h48eae69_3
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=13_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_openblas
- libcurl=7.81.0=h494985f_0
- libdeflate=1.10=h7f98852_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1d223b6_12
- libgd=2.3.3=h3cfcdeb_1
- libgfortran-ng=11.2.0=h69a702a_12
- libgfortran5=11.2.0=h5c6108e_12
- libgomp=11.2.0=h1d223b6_12
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=13_linux64_openblas
- libnghttp2=1.46.0=ha19adfc_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libssh2=1.10.0=ha35d2d1_2
- libstdcxx-ng=11.2.0=he4da1e4_12
- libtiff=4.3.0=h542a066_3
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- llvm-openmp=8.0.1=hc9558a2_0
- lz4-c=1.9.3=h9c3ff4c_1
- lzstring=1.0.4=py_1001
- markdown=3.3.6=pyhd8ed1ab_0
- markupsafe=2.1.0=py37h540881e_0
- matplotlib-base=3.5.1=py37h1058ff1_0
- minimap2=2.24=h5bf99c6_0
- multiqc=1.12=pyhdfd78af_0
- munkres=1.0.7=py_1
- ncurses=6.3=h9c3ff4c_0
- networkx=2.5.1=pyhd8ed1ab_0
- numpy=1.21.5=py37hf2998dd_0
- openjdk=8.0.312=h7f98852_0
- openjpeg=2.4.0=hb52868f_1
- openmp=8.0.1=0
- openssl=3.0.0=h7f98852_2
- packaging=21.3=pyhd8ed1ab_0
- pbzip2=1.1.13=0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=2_h7f98852_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-autoloader=5.74=pl5321hdfd78af_3
- perl-carp=1.38=pl5321hdfd78af_4
- perl-clone=0.42=pl5321h779adbc_1
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.101=pl5321h1b792b2_0
- perl-compress-raw-zlib=2.101=pl5321h1b792b2_1
- perl-config-general=2.63=pl5321hdfd78af_1
- perl-digest-perl-md5=1.9=pl5321hdfd78af_2
- perl-dynaloader=1.25=pl5321hdfd78af_2
- perl-encode=3.16=pl5321h779adbc_0
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-font-ttf=1.06=pl5321hdfd78af_1
- perl-gd=2.76=pl5321h2e03b76_0
- perl-io-compress=2.102=pl5321h1b792b2_0
- perl-io-string=1.08=pl5321hdfd78af_4
- perl-io-zlib=1.11=pl5321hdfd78af_0
- perl-json=4.05=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h7d875b9_4
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h779adbc_0
- perl-math-bezier=0.01=pl5321hdfd78af_2
- perl-math-round=0.07=pl5321hdfd78af_2
- perl-math-vecstat=0.08=pl5321hdfd78af_2
- perl-module-implementation=0.09=pl5321hdfd78af_3
- perl-module-runtime=0.016=pl5321hdfd78af_2
- perl-number-format=1.75=pl5321hdfd78af_4
- perl-params-validate=1.30=pl5321h779adbc_0
- perl-parent=0.236=pl5321hdfd78af_2
- perl-pathtools=3.75=pl5321h779adbc_2
- perl-readonly=2.05=pl5321hdfd78af_1
- perl-regexp-common=2017060201=pl5321hdfd78af_1
- perl-scalar-list-utils=1.61=pl5321h779adbc_0
- perl-set-intspan=1.19=pl5321hdfd78af_2
- perl-statistics-basic=1.6611=pl5321hdfd78af_3
- perl-svg=2.86=pl5321hdfd78af_0
- perl-text-format=0.62=pl5321hdfd78af_0
- perl-threaded=5.32.1=hdfd78af_1
- perl-time-hires=1.9764=pl5321h779adbc_1
- perl-try-tiny=0.31=pl5321hdfd78af_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-xml-parser=2.44=3
- pillow=9.0.1=py37h44f0d7a_2
- pip=22.0.3=pyhd8ed1ab_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pysocks=1.7.1=py37h89c1867_4
- python=3.7.12=hf930737_100_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=2_cp37m
- pyyaml=6.0=py37h5e8e339_3
- quast=5.0.2=py37pl5321hfecc14a_6
- readline=8.1=h46c0cb4_0
- requests=2.27.1=pyhd8ed1ab_0
- rich=11.2.0=pyhd8ed1ab_0
- samtools=1.7=1
- setuptools=60.9.3=py37h89c1867_0
- simplejson=3.17.6=py37h5e8e339_0
- six=1.16.0=pyh6c4a22f_0
- spades=3.15.4=h95f258a_0
- spectra=0.0.11=py_1
- sqlite=3.37.0=h9cd32fc_0
- sysroot_linux-64=2.17=h4a8ded7_13
- tk=8.6.12=h27826a3_0
- typing_extensions=4.1.1=pyha770c72_0
- unicodedata2=14.0.0=py37h5e8e339_0
- unzip=6.0=h7f98852_3
- urllib3=1.26.8=pyhd8ed1ab_1
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7f98852_2
- zipp=3.7.0=pyhd8ed1ab_1
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.2=ha95c52a_0
prefix: /home/groupa/bin/miniconda3/envs/T1G1_final_assembly