Release 3.0.0 #19
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| name: compile latex CI | |
| # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| release: | |
| types: [published] | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| NFT_VER: "0.9.5" | |
| NFT_WORKDIR: "~" | |
| NXF_ANSI_LOG: false | |
| jobs: | |
| test: | |
| name: Run pipeline with test data | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| NXF_VER: | |
| - "25.10.2" | |
| - "latest-everything" | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@v2 | |
| - name: Install Nextflow | |
| uses: nf-core/setup-nextflow@v2 | |
| with: | |
| version: "${{ matrix.NXF_VER }}" | |
| - name: Set up Python | |
| uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6 | |
| with: | |
| python-version: "3.14" | |
| - name: Install nf-test | |
| uses: nf-core/setup-nf-test@v1 | |
| with: | |
| version: "${{ env.NFT_VER }}" | |
| install-pdiff: true | |
| - name: Run nf-test | |
| shell: bash | |
| env: | |
| NFT_WORKDIR: ${{ env.NFT_WORKDIR }} | |
| run: | | |
| nf-test test \ | |
| --profile=+docker \ | |
| --ci \ | |
| --verbose \ | |
| --tap=test.tap |