added kernel_root override based on CLI passed env vars.

Author: hdpriest-ui

Deploy.md

@@ -33,9 +33,15 @@ Tested on campus cluster via apptainer, this indexes the central repository of k
 (base) [hdpriest@cc-login2 icrn_manager]$ apptainer pull docker://hdpriest0uiuc/icrn-kernel-indexer
 
 (base) [hdpriest@cc-login2 icrn_manager]$ apptainer run --bind /sw/icrn/jupyter/icrn_ncsa_resources/Kernels:/sw/icrn/jupyter/icrn_ncsa_resources/Kernels icrn-kernel-indexer_latest.sif
+```
+
+For dev and prod environments, the kernel index job needs to be run using a custom kernel root env variable (see directly below)
 
+this will obviously be different based on the container runtime
+```sh
 #### DEV
-(base) [hdpriest@cc-login2 icrn_manager]$ apptainer run --bind /sw/icrn/dev/kernels:/sw/icrn/dev/kernels icrn-kernel-indexer_latest.sif
+(base) [hdpriest@cc-login2 icrn_manager]$ 
+apptainer run --env "KERNEL_ROOT=/sw/icrn/dev/kernels" --bind /sw/icrn/dev/kernels:/sw/icrn/dev/kernels icrn-kernel-indexer_latest.sif
 ## ... output
 Collated manifest written to: /sw/icrn/jupyter/icrn_ncsa_resources/Kernels/collated_manifests.json
 ## ... output

kernel-indexer/README.md

@@ -30,16 +30,16 @@ docker build -t icrn-kernel-indexer:latest .
 
 ```bash
 docker run --rm \
-  -v /sw/icrn/jupyter/icrn_ncsa_resources/Kernels:/sw/icrn/jupyter/icrn_ncsa_resources/Kernels \
+  -v /sw/icrn/dev/kernels:/sw/icrn/dev/kernels \
   icrn-kernel-indexer:latest
 ```
 
 ### With Custom Configuration
 
 ```bash
 docker run --rm \
-  -v /sw/icrn/jupyter/icrn_ncsa_resources/Kernels:/sw/icrn/jupyter/icrn_ncsa_resources/Kernels \
-  -e KERNEL_ROOT=/sw/icrn/jupyter/icrn_ncsa_resources/Kernels \
+  -v /sw/icrn/dev/kernels:/sw/icrn/dev/kernels \
+  -e KERNEL_ROOT=/sw/icrn/dev/kernels \
   -e LANGUAGE_FILTER=Python \
   -e LOG_LEVEL=DEBUG \
   icrn-kernel-indexer:latest