Add gold_standard parameter to clusterbootWrapper function #4
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| name: R Package Tests | |
| on: | |
| push: | |
| branches: [ main, master, develop ] | |
| pull_request: | |
| branches: [ main, master, develop ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| r-version: ['4.3', 'latest'] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev | |
| - name: Install R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::pak | |
| any::testthat | |
| - name: Install package | |
| run: | | |
| pak::pak("local::.") | |
| shell: Rscript {0} | |
| - name: Run tests | |
| run: | | |
| test_files <- list.files("tests", pattern = "^test.*\\.R$", full.names = TRUE) | |
| if (length(test_files) == 0) { | |
| cat("No test files found\n") | |
| quit(save = "no", status = 0) | |
| } | |
| for (test_file in test_files) { | |
| cat("\n=====================================\n") | |
| cat("Running:", test_file, "\n") | |
| cat("=====================================\n") | |
| tryCatch( | |
| source(test_file), | |
| error = function(e) { | |
| cat("ERROR in", test_file, ":\n") | |
| print(e) | |
| quit(save = "no", status = 1) | |
| } | |
| ) | |
| } | |
| cat("\nAll tests completed successfully!\n") | |
| shell: Rscript {0} | |
| - name: Upload test results | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-results-${{ matrix.os }}-r${{ matrix.r-version }} | |
| path: tests/ | |
| retention-days: 30 |