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LogsCheckpointTest.groovy
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105 lines (90 loc) · 2.94 KB
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/*
* Copyright 2013-2026, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package io.seqera.tower.plugin
import nextflow.Session
import nextflow.SysEnv
import nextflow.util.Duration
import spock.lang.Specification
import test.TestHelper
/**
*
* @author Paolo Di Tommaso <paolo.ditommaso@gmail.com>
*/
class LogsCheckpointTest extends Specification {
def 'should configure default delay' () {
given:
def session = Mock(Session) {
getWorkDir() >> TestHelper.createInMemTempDir()
getConfig() >> [:]
}
and:
def checkpoint = new LogsCheckpoint()
when:
checkpoint.onFlowCreate(session)
then:
checkpoint.@interval == Duration.of('90s')
}
def 'should configure delay via env var' () {
given:
SysEnv.push(TOWER_LOGS_CHECKPOINT_INTERVAL: '200s')
def session = Mock(Session) {
getWorkDir() >> TestHelper.createInMemTempDir()
getConfig() >> [:]
}
and:
def checkpoint = new LogsCheckpoint()
when:
checkpoint.onFlowCreate(session)
then:
checkpoint.@interval == Duration.of('200s')
cleanup:
SysEnv.pop()
}
def 'should configure delay via config file' () {
given:
SysEnv.push(NXF_WORK: '/some/path', TOWER_LOGS_CHECKPOINT_INTERVAL: '200s')
def session = Mock(Session) {
getConfig()>>[tower:[logs:[checkpoint:[interval: '500s']]]]
getWorkDir() >> TestHelper.createInMemTempDir()
}
and:
def checkpoint = new LogsCheckpoint()
when:
checkpoint.onFlowCreate(session)
then:
checkpoint.@interval == Duration.of('500s')
cleanup:
SysEnv.pop()
}
def 'should perform final saveFiles when interrupted mid-sleep' () {
given:
SysEnv.push(TOWER_LOGS_CHECKPOINT_INTERVAL: '60s')
def session = Mock(Session) {
getWorkDir() >> TestHelper.createInMemTempDir()
getConfig() >> [:]
}
def handler = Mock(LogsHandler)
def checkpoint = new LogsCheckpoint()
when:
checkpoint.onFlowCreate(session)
checkpoint.@handler = handler // inject mock before thread wakes up
checkpoint.onFlowComplete()
then:
1 * handler.saveFiles() >> { assert !Thread.currentThread().isInterrupted() }
cleanup:
SysEnv.pop()
}
}