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Commit 81311b4

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Lines changed: 9 additions & 13 deletions

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  • subworkflows/local/prepare_genome

subworkflows/local/prepare_genome/main.nf

Lines changed: 9 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -2,19 +2,15 @@
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// Uncompress and prepare reference genome files
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//
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include {
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GUNZIP as GUNZIP_FASTA ;
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GUNZIP as GUNZIP_GTF ;
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GUNZIP as GUNZIP_GFF ;
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GUNZIP as GUNZIP_GENE_BED ;
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GUNZIP as GUNZIP_BLACKLIST
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} from '../../../modules/nf-core/gunzip'
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include {
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UNTAR as UNTAR_BWA_INDEX ;
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UNTAR as UNTAR_BOWTIE2_INDEX ;
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UNTAR as UNTAR_STAR_INDEX
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} from '../../../modules/nf-core/untar'
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include { GUNZIP as GUNZIP_FASTA } from '../../../modules/nf-core/gunzip'
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include { GUNZIP as GUNZIP_GTF } from '../../../modules/nf-core/gunzip'
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include { GUNZIP as GUNZIP_GFF } from '../../../modules/nf-core/gunzip'
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include { GUNZIP as GUNZIP_GENE_BED } from '../../../modules/nf-core/gunzip'
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include { GUNZIP as GUNZIP_BLACKLIST } from '../../../modules/nf-core/gunzip'
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include { UNTAR as UNTAR_BWA_INDEX } from '../../../modules/nf-core/untar'
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include { UNTAR as UNTAR_BOWTIE2_INDEX } from '../../../modules/nf-core/untar'
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include { UNTAR as UNTAR_STAR_INDEX } from '../../../modules/nf-core/untar'
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include { UNTARFILES } from '../../../modules/nf-core/untarfiles'
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include { GFFREAD } from '../../../modules/nf-core/gffread'

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