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subworkflows/local/prepare_genome Expand file tree Collapse file tree Original file line number Diff line number Diff line change 22// Uncompress and prepare reference genome files
33//
44
5- include {
6- GUNZIP as GUNZIP_FASTA ;
7- GUNZIP as GUNZIP_GTF ;
8- GUNZIP as GUNZIP_GFF ;
9- GUNZIP as GUNZIP_GENE_BED ;
10- GUNZIP as GUNZIP_BLACKLIST
11- } from ' ../../../modules/nf-core/gunzip'
12-
13- include {
14- UNTAR as UNTAR_BWA_INDEX ;
15- UNTAR as UNTAR_BOWTIE2_INDEX ;
16- UNTAR as UNTAR_STAR_INDEX
17- } from ' ../../../modules/nf-core/untar'
5+ include { GUNZIP as GUNZIP_FASTA } from ' ../../../modules/nf-core/gunzip'
6+ include { GUNZIP as GUNZIP_GTF } from ' ../../../modules/nf-core/gunzip'
7+ include { GUNZIP as GUNZIP_GFF } from ' ../../../modules/nf-core/gunzip'
8+ include { GUNZIP as GUNZIP_GENE_BED } from ' ../../../modules/nf-core/gunzip'
9+ include { GUNZIP as GUNZIP_BLACKLIST } from ' ../../../modules/nf-core/gunzip'
10+
11+ include { UNTAR as UNTAR_BWA_INDEX } from ' ../../../modules/nf-core/untar'
12+ include { UNTAR as UNTAR_BOWTIE2_INDEX } from ' ../../../modules/nf-core/untar'
13+ include { UNTAR as UNTAR_STAR_INDEX } from ' ../../../modules/nf-core/untar'
1814
1915include { UNTARFILES } from ' ../../../modules/nf-core/untarfiles'
2016include { GFFREAD } from ' ../../../modules/nf-core/gffread'
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