configs/conf/brain.config at ce468c6bb46f7eeabd372e9f4a8647f93322d290 · nf-core/configs · GitHub

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// ─────────────────────────────────────────────────────────────────────────────
// Global Parameters
// ─────────────────────────────────────────────────────────────────────────────
params {
    config_profile_name        = 'Brain Image Library Analysis Ecosystem'
    config_profile_description = 'A public resource enabling researchers to deposit, analyze, mine, share, and interact with large brain image datasets.'
    config_profile_url         = 'https://www.brainimagelibrary.org'
    config_profile_contact     = 'Ivan Cao-Berg (@icaoberg)'

    // General resource boundaries (used in profile as well)
    max_memory = 2.9.Tb
    max_cpus   = 80
    max_time   = 48.h

    // Ignore iGenomes when not needed
    igenomes_ignore = true
    igenomesIgnore  = true
}

// ─────────────────────────────────────────────────────────────────────────────
// Singularity Configuration
// ─────────────────────────────────────────────────────────────────────────────
singularity {
    enabled     = true
    autoMounts  = true
    runOptions  = '''
        --home $HOME:/bil/users/$USER \
        --bind /scratch \
        --bind /local
    '''
}

// ─────────────────────────────────────────────────────────────────────────────
// Executor Configuration
// ─────────────────────────────────────────────────────────────────────────────
executor {
    queueSize       = 10
    submitRateLimit = '5 sec'
}

// ─────────────────────────────────────────────────────────────────────────────
// Profiles
// ─────────────────────────────────────────────────────────────────────────────
profiles {
    compute {
        params {
            config_profile_name        = 'BIL - General Computing Partition'
            config_profile_description = 'Brain Image Library Analysis Ecosystem at the Pittsburgh Supercomputing Center'
            config_profile_url         = 'https://www.brainimagelibrary.org'
            config_profile_contact     = 'Ivan Cao-Berg (@icaoberg)'
        }

        process {
            executor        = 'slurm'
            queue           = 'compute'
            queueSize       = 10
            clusterOptions  = '--qos=normal'

            // Set scratch directory to /local
            scratch        = true
            scratchMount   = '/local'

            // Default per-process limits
            resourceLimits = [
                memory: 128.Gb,
                cpus  : 16,
                time  : 4.h
            ]
        }
    }
}