embl_hd: Update retry.reason regex pattern in config (#1101)

Author: ftabaro

conf/embl_hd.config

@@ -15,18 +15,19 @@ docker {
 
 apptainer {
     autoMounts = true
-    pullTimeout = "3 hours"                // the default is 20 minutes and fails with large images
+    pullTimeout = "3h"                // the default is 20 minutes and fails with large images
     envWhitelist = 'CUDA_VISIBLE_DEVICES'  // allow the bounding of GPU visible device variable into the containers
     libraryDir = '/cvmfs/singularity.galaxyproject.org/all/'
 }
 
 singularity {
     autoMounts = true
-    pullTimeout = "3 hours"
+    pullTimeout = "3h"
     envWhitelist = 'CUDA_VISIBLE_DEVICES'
 }
 
 process {
+    executor = 'slurm'
     maxRetries = 3
     errorStrategy = { task.attempt<3 ? 'retry' : 'ignore' }
     cache = 'lenient'
@@ -53,5 +54,5 @@ executor {
     submitRateLimit = "10/1sec"
     pollInterval = '10sec'
     exitReadTimeout = "5 min"
-    retry.reason = "*"
+    retry.reason = ".*"
 }