eager/conf/test_tsv_fna.config at 102a62f3468c69d2e958651572e9bbb343b9ab8d · nf-core/eager · GitHub

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/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 * nextflow run nf-core/eager -profile test, docker (or singularity, or conda)
 */

params {
  config_profile_name = 'Test profile'
  config_profile_description = 'Minimal test dataset to check pipeline function'
  // Limit resources so that this can run on Travis
  max_cpus = 2
  max_memory = 6.GB
  max_time = 48.h
  genome = false
  //Input data
  input = 'https://raw.githubusercontent.com/nf-core/test-datasets/eager/testdata/Mammoth/mammoth_design_fastq.tsv'
  // Genome references
  fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/eager/reference/Mammoth/Mammoth_MT_Krause.fna'
}

process {

  withLabel:'sc_tiny'{
      cpus = { check_max( 1, 'cpus' ) }
      memory = { check_max( 1.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

  withLabel:'sc_small'{
      cpus = { check_max( 1, 'cpus' ) }
      memory = { check_max( 4.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

  withLabel:'sc_medium'{
      cpus = { check_max( 1, 'cpus' ) }
      memory = { check_max( 8.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

  withLabel:'mc_small'{
      cpus = { check_max( 2 * task.attempt, 'cpus' ) }
      memory = { check_max( 4.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

  withLabel:'mc_medium' {
      cpus = { check_max( 4 * task.attempt, 'cpus' ) }
      memory = { check_max( 8.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

  withLabel:'mc_large'{
      cpus = { check_max( 8 * task.attempt, 'cpus' ) }
      memory = { check_max( 16.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

  withLabel:'mc_huge'{
      cpus = { check_max( 32 * task.attempt, 'cpus' ) }
      memory = { check_max( 256.GB * task.attempt, 'memory' ) }
      time = { check_max( 1.h * task.attempt, 'time' ) }
  }

}