eager/modules/nf-core/haplogrep3/classify/tests/main.nf.test at 432bd67f0f95252a5d5370dc7b1ca76b59fe6e89 · nf-core/eager · GitHub

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nextflow_process {

    name "Test Process HAPLOGREP3_CLASSIFY"
    script "../main.nf"
    process "HAPLOGREP3_CLASSIFY"

    tag "modules"
    tag "modules_nfcore"
    tag "haplogrep3"
    tag "haplogrep3/classify"

    test("test-haplogrep3-classify") {

        config './nextflow.config'

        when {
            process {
                """
                input[0] = [
				    [ id:'test', single_end:false ], // meta map
				    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/vcf/NA12878_chrM.vcf.gz', checkIfExists: true)
				]
                """
            }
        }

        then {
            assertAll(
                { assert process.success },
                { assert snapshot(process.out).match() }
            )
        }
    }

    test("test-haplogrep3-classify-stub") {

        options '-stub'

        when {
            process {
                """
                input[0] = [
				    [ id:'test', single_end:false ], // meta map
				    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/vcf/NA12878_chrM.vcf.gz', checkIfExists: true)
				]
                """
            }
        }

        then {
            assertAll(
                { assert process.success },
                { assert snapshot(process.out).match() }
            )
        }
    }

}