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Merge pull request #841 from nf-core/preseq-docs
Add step size to lc_extrap docs
2 parents 13b7f56 + e4ba61b commit 000807a

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CHANGELOG.md

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@@ -12,9 +12,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
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- [#828](https://github.com/nf-core/eager/issues/828) Improved error message if required metagenomic screening parameters not set correctly
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- [#836](https://github.com/nf-core/eager/issues/836) Remove deprecated parameters from test profiles
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- [#838](https://github.com/nf-core/eager/issues/836) Fix --snpcapture_bed files not being picked up by Nextflow
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- [#845](https://github.com/nf-core/eager/issues/845) Updates parameter documention to specify `-s` preseq parameter also applies to lc_extrap
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- [#851](https://github.com/nf-core/eager/issues/851) Fixes a file-name clash during additional_library_merge, post-BAM trimming of different UDG treated libraries of a sample
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- Fix PMDtools reference mask not being picked up by Nextflow, and it's use being evaluated against --snpcapture_bed rather than --pmdtools_reference_mask
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- Renamed a range of MultiQC general stats table headers to improve clarity, documentation has been updated accordingly
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- [#851](https://github.com/nf-core/eager/issues/851) Fixes a file-name clash during additional_library_merge, post-BAM trimming of different UDG treated libraries of a sample
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### `Dependencies`
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nextflow_schema.json

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"default": 1000,
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"description": "Specify the step size of Preseq.",
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"fa_icon": "fas fa-shoe-prints",
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"help_text": "Can be used to configure the step size of Preseq's `c_curve` method. Can be useful when only few and thus shallow sequencing results are used for extrapolation.\n\n> Modifies preseq c_curve parameter: `-s`"
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"help_text": "Can be used to configure the step size of Preseq's `c_curve` and `lc_extrap` method. Can be useful when only few and thus shallow sequencing results are used for extrapolation.\n\n> Modifies preseq c_curve and lc_extrap parameter: `-s`"
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},
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"preseq_maxextrap": {
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"type": "integer",

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