You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: CHANGELOG.md
+2-1Lines changed: 2 additions & 1 deletion
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -12,9 +12,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
12
12
-[#828](https://github.com/nf-core/eager/issues/828) Improved error message if required metagenomic screening parameters not set correctly
13
13
-[#836](https://github.com/nf-core/eager/issues/836) Remove deprecated parameters from test profiles
14
14
-[#838](https://github.com/nf-core/eager/issues/836) Fix --snpcapture_bed files not being picked up by Nextflow
15
+
-[#845](https://github.com/nf-core/eager/issues/845) Updates parameter documention to specify `-s` preseq parameter also applies to lc_extrap
16
+
-[#851](https://github.com/nf-core/eager/issues/851) Fixes a file-name clash during additional_library_merge, post-BAM trimming of different UDG treated libraries of a sample
15
17
- Fix PMDtools reference mask not being picked up by Nextflow, and it's use being evaluated against --snpcapture_bed rather than --pmdtools_reference_mask
16
18
- Renamed a range of MultiQC general stats table headers to improve clarity, documentation has been updated accordingly
17
-
-[#851](https://github.com/nf-core/eager/issues/851) Fixes a file-name clash during additional_library_merge, post-BAM trimming of different UDG treated libraries of a sample
Copy file name to clipboardExpand all lines: nextflow_schema.json
+1-1Lines changed: 1 addition & 1 deletion
Original file line number
Diff line number
Diff line change
@@ -806,7 +806,7 @@
806
806
"default": 1000,
807
807
"description": "Specify the step size of Preseq.",
808
808
"fa_icon": "fas fa-shoe-prints",
809
-
"help_text": "Can be used to configure the step size of Preseq's `c_curve` method. Can be useful when only few and thus shallow sequencing results are used for extrapolation.\n\n> Modifies preseq c_curve parameter: `-s`"
809
+
"help_text": "Can be used to configure the step size of Preseq's `c_curve` and `lc_extrap` method. Can be useful when only few and thus shallow sequencing results are used for extrapolation.\n\n> Modifies preseq c_curve and lc_extrap parameter: `-s`"
0 commit comments