Skip to content

Commit 0365726

Browse files
TCLamnidisTCLamnidis
committed
update snapshot
1 parent ff1600a commit 0365726

1 file changed

Lines changed: 22 additions & 26 deletions

File tree

‎tests/test_humanpopgen.nf.test.snap‎

Lines changed: 22 additions & 26 deletions
Original file line numberDiff line numberDiff line change
@@ -155,6 +155,7 @@
155155
"JK2067_JK2067_hs37d5_chr21-MT.kraken2.report.txt",
156156
"JK2067_downsampled_JK2067_downsampled_hs37d5_chr21-MT.kraken2.report.txt",
157157
"kraken2_taxpasta_table.tsv",
158+
"BETA-multiqc.parquet",
158159
"fastp-seq-content-gc-plot_Read_1_After_filtering.txt",
159160
"fastp-seq-content-gc-plot_Read_1_Before_filtering.txt",
160161
"fastp-seq-content-n-plot_Read_1_After_filtering.txt",
@@ -192,8 +193,8 @@
192193
"qualimap_coverage_histogram.txt",
193194
"qualimap_gc_content.txt",
194195
"qualimap_genome_fraction.txt",
195-
"samtools-flagstat-dp_Percentage_of_total.txt",
196-
"samtools-flagstat-dp_Read_counts.txt",
196+
"samtools-flagstat-pct-table.txt",
197+
"samtools-flagstat-table.txt",
197198
"sexdeterrmine-rate-plot.txt",
198199
"sexdeterrmine-readcounts-plot.txt",
199200
"sexdeterrmine-snps-plot.txt",
@@ -218,15 +219,14 @@
218219
"fastqc_sequence_duplication_levels_plot.pdf",
219220
"fastqc_sequence_length_distribution_plot.pdf",
220221
"fastqc_top_overrepresented_sequences_table.pdf",
221-
"general_stats_table.pdf",
222222
"kraken-top-n-plot-cnt.pdf",
223223
"kraken-top-n-plot-pct.pdf",
224224
"preseq_complexity_plot_molecules.pdf",
225225
"qualimap_coverage_histogram.pdf",
226226
"qualimap_gc_content.pdf",
227227
"qualimap_genome_fraction.pdf",
228-
"samtools-flagstat-dp_Percentage_of_total.pdf",
229-
"samtools-flagstat-dp_Read_counts.pdf",
228+
"samtools-flagstat-pct-table.pdf",
229+
"samtools-flagstat-table.pdf",
230230
"sexdeterrmine-rate-plot.pdf",
231231
"sexdeterrmine-readcounts-plot-cnt.pdf",
232232
"sexdeterrmine-readcounts-plot-pct.pdf",
@@ -253,15 +253,14 @@
253253
"fastqc_sequence_duplication_levels_plot.png",
254254
"fastqc_sequence_length_distribution_plot.png",
255255
"fastqc_top_overrepresented_sequences_table.png",
256-
"general_stats_table.png",
257256
"kraken-top-n-plot-cnt.png",
258257
"kraken-top-n-plot-pct.png",
259258
"preseq_complexity_plot_molecules.png",
260259
"qualimap_coverage_histogram.png",
261260
"qualimap_gc_content.png",
262261
"qualimap_genome_fraction.png",
263-
"samtools-flagstat-dp_Percentage_of_total.png",
264-
"samtools-flagstat-dp_Read_counts.png",
262+
"samtools-flagstat-pct-table.png",
263+
"samtools-flagstat-table.png",
265264
"sexdeterrmine-rate-plot.png",
266265
"sexdeterrmine-readcounts-plot-cnt.png",
267266
"sexdeterrmine-readcounts-plot-pct.png",
@@ -288,15 +287,14 @@
288287
"fastqc_sequence_duplication_levels_plot.svg",
289288
"fastqc_sequence_length_distribution_plot.svg",
290289
"fastqc_top_overrepresented_sequences_table.svg",
291-
"general_stats_table.svg",
292290
"kraken-top-n-plot-cnt.svg",
293291
"kraken-top-n-plot-pct.svg",
294292
"preseq_complexity_plot_molecules.svg",
295293
"qualimap_coverage_histogram.svg",
296294
"qualimap_gc_content.svg",
297295
"qualimap_genome_fraction.svg",
298-
"samtools-flagstat-dp_Percentage_of_total.svg",
299-
"samtools-flagstat-dp_Read_counts.svg",
296+
"samtools-flagstat-pct-table.svg",
297+
"samtools-flagstat-table.svg",
300298
"sexdeterrmine-rate-plot.svg",
301299
"sexdeterrmine-readcounts-plot-cnt.svg",
302300
"sexdeterrmine-readcounts-plot-pct.svg",
@@ -325,9 +323,9 @@
325323
],
326324
"meta": {
327325
"nf-test": "0.9.2",
328-
"nextflow": "24.10.6"
326+
"nextflow": "25.04.7"
329327
},
330-
"timestamp": "2025-08-15T10:45:17.746067"
328+
"timestamp": "2025-09-12T11:00:18.111975"
331329
},
332330
"read_filtering": {
333331
"content": [
@@ -471,6 +469,7 @@
471469
"multiqc": {
472470
"content": [
473471
[
472+
"BETA-multiqc.parquet",
474473
"fastp-seq-content-gc-plot_Read_1_After_filtering.txt",
475474
"fastp-seq-content-gc-plot_Read_1_Before_filtering.txt",
476475
"fastp-seq-content-n-plot_Read_1_After_filtering.txt",
@@ -508,8 +507,8 @@
508507
"qualimap_coverage_histogram.txt",
509508
"qualimap_gc_content.txt",
510509
"qualimap_genome_fraction.txt",
511-
"samtools-flagstat-dp_Percentage_of_total.txt",
512-
"samtools-flagstat-dp_Read_counts.txt",
510+
"samtools-flagstat-pct-table.txt",
511+
"samtools-flagstat-table.txt",
513512
"sexdeterrmine-rate-plot.txt",
514513
"sexdeterrmine-readcounts-plot.txt",
515514
"sexdeterrmine-snps-plot.txt",
@@ -534,15 +533,14 @@
534533
"fastqc_sequence_duplication_levels_plot.pdf",
535534
"fastqc_sequence_length_distribution_plot.pdf",
536535
"fastqc_top_overrepresented_sequences_table.pdf",
537-
"general_stats_table.pdf",
538536
"kraken-top-n-plot-cnt.pdf",
539537
"kraken-top-n-plot-pct.pdf",
540538
"preseq_complexity_plot_molecules.pdf",
541539
"qualimap_coverage_histogram.pdf",
542540
"qualimap_gc_content.pdf",
543541
"qualimap_genome_fraction.pdf",
544-
"samtools-flagstat-dp_Percentage_of_total.pdf",
545-
"samtools-flagstat-dp_Read_counts.pdf",
542+
"samtools-flagstat-pct-table.pdf",
543+
"samtools-flagstat-table.pdf",
546544
"sexdeterrmine-rate-plot.pdf",
547545
"sexdeterrmine-readcounts-plot-cnt.pdf",
548546
"sexdeterrmine-readcounts-plot-pct.pdf",
@@ -569,15 +567,14 @@
569567
"fastqc_sequence_duplication_levels_plot.png",
570568
"fastqc_sequence_length_distribution_plot.png",
571569
"fastqc_top_overrepresented_sequences_table.png",
572-
"general_stats_table.png",
573570
"kraken-top-n-plot-cnt.png",
574571
"kraken-top-n-plot-pct.png",
575572
"preseq_complexity_plot_molecules.png",
576573
"qualimap_coverage_histogram.png",
577574
"qualimap_gc_content.png",
578575
"qualimap_genome_fraction.png",
579-
"samtools-flagstat-dp_Percentage_of_total.png",
580-
"samtools-flagstat-dp_Read_counts.png",
576+
"samtools-flagstat-pct-table.png",
577+
"samtools-flagstat-table.png",
581578
"sexdeterrmine-rate-plot.png",
582579
"sexdeterrmine-readcounts-plot-cnt.png",
583580
"sexdeterrmine-readcounts-plot-pct.png",
@@ -604,15 +601,14 @@
604601
"fastqc_sequence_duplication_levels_plot.svg",
605602
"fastqc_sequence_length_distribution_plot.svg",
606603
"fastqc_top_overrepresented_sequences_table.svg",
607-
"general_stats_table.svg",
608604
"kraken-top-n-plot-cnt.svg",
609605
"kraken-top-n-plot-pct.svg",
610606
"preseq_complexity_plot_molecules.svg",
611607
"qualimap_coverage_histogram.svg",
612608
"qualimap_gc_content.svg",
613609
"qualimap_genome_fraction.svg",
614-
"samtools-flagstat-dp_Percentage_of_total.svg",
615-
"samtools-flagstat-dp_Read_counts.svg",
610+
"samtools-flagstat-pct-table.svg",
611+
"samtools-flagstat-table.svg",
616612
"sexdeterrmine-rate-plot.svg",
617613
"sexdeterrmine-readcounts-plot-cnt.svg",
618614
"sexdeterrmine-readcounts-plot-pct.svg",
@@ -623,9 +619,9 @@
623619
],
624620
"meta": {
625621
"nf-test": "0.9.2",
626-
"nextflow": "24.10.6"
622+
"nextflow": "25.04.7"
627623
},
628-
"timestamp": "2025-08-15T10:45:18.97257"
624+
"timestamp": "2025-09-12T11:00:18.586234"
629625
},
630626
"mapping_output": {
631627
"content": [

0 commit comments

Comments
 (0)
⚡