Merge pull request #3 from nf-core/dev

jfy133 · web-flow · commit 03925e7d7304 · 2020-12-07T14:53:04.000+01:00
Latest
diff --git a/conf/test_stresstest_human.config b/conf/test_stresstest_human.config
@@ -61,6 +61,7 @@ process {
       time = { check_max( 48.h * task.attempt, 'time' ) }
    }
    withName:'markduplicates'{
+      errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' }
       cpus = { check_max( 16, 'cpus' ) }
       memory = { check_max( 16.GB * task.attempt, 'memory' ) }
       time = { check_max( 48.h * task.attempt, 'time' ) }

Original file line number	Diff line number	Diff line change
`@@ -61,6 +61,7 @@ process {`
`61`	`61`	`time = { check_max( 48.h * task.attempt, 'time' ) }`
`62`	`62`	`}`
`63`	`63`	`withName:'markduplicates'{`
	`64`	`+ errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' }`
`64`	`65`	`cpus = { check_max( 16, 'cpus' ) }`
`65`	`66`	`memory = { check_max( 16.GB * task.attempt, 'memory' ) }`
`66`	`67`	`time = { check_max( 48.h * task.attempt, 'time' ) }`