Update conf/modules.config

jbv2 · jfy133 · web-flow · commit 13bc21a2c213 · 2025-03-28T11:32:32.000+01:00
Co-authored-by: James A. Fellows Yates &lt;jfy133@gmail.com&gt;
diff --git a/conf/modules.config b/conf/modules.config
@@ -1617,7 +1617,7 @@ process {
         ext.args   = {
             [
                 "--sample-ploidy ${meta2.ploidy}",
-                "            ref_meta.ploidy ? "--sample-ploidy ${ref_meta.ploidy}" : "--sample-ploidy 2", 
+                ref_meta.ploidy ? "--sample-ploidy ${ref_meta.ploidy}" : "--sample-ploidy 2", 
 
                 "-stand_call_conf ${params.genotyping_gatk_call_conf}",
                 "-dcov ${params.genotyping_gatk_ug_downsample}",

Original file line number	Diff line number	Diff line change
`@@ -1617,7 +1617,7 @@ process {`
`1617`	`1617`	`ext.args = {`
`1618`	`1618`	`[`
`1619`	`1619`	`"--sample-ploidy ${meta2.ploidy}",`
`1620`		`- " ref_meta.ploidy ? "--sample-ploidy ${ref_meta.ploidy}" : "--sample-ploidy 2",`
	`1620`	`+ ref_meta.ploidy ? "--sample-ploidy ${ref_meta.ploidy}" : "--sample-ploidy 2",`
`1621`	`1621`
`1622`	`1622`	`"-stand_call_conf ${params.genotyping_gatk_call_conf}",`
`1623`	`1623`	`"-dcov ${params.genotyping_gatk_ug_downsample}",`