Merge pull request #670 from nf-core/fix-mqc-retry

jfy133 · web-flow · commit 1f7e7a2beaa8 · 2021-01-26T06:31:31.000+01:00
Fix mqc retry
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 ### `Fixed`
 
 - [#631](https://github.com/nf-core/eager/issues/631): - Update minimum Nextflow version to 20.07.1, due to unfortunate bug in Nextflow 20.04.1 causing eager to crash if patch pulled
+- Made MultiQC crash behaviour stricter when dealing with large datasets, as reported by @ashildv
 
 ### `Dependencies`
 
diff --git a/conf/base.config b/conf/base.config
@@ -104,10 +104,6 @@ process {
     errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'ignore' : 'retry' }
   }
 
-  withName: multiqc {
-    errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'ignore' }
-  }
-
 }
 
 params {

Original file line number	Diff line number	Diff line change
`@@ -104,10 +104,6 @@ process {`
`104`	`104`	`errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'ignore' : 'retry' }`
`105`	`105`	`}`
`106`	`106`
`107`		`- withName: multiqc {`
`108`		`- errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'ignore' }`
`109`		`- }`
`110`		`-`
`111`	`107`	`}`
`112`	`108`
`113`	`109`	`params {`