Remove leftover view and run strip_Fastq test on more appropriate tSV

Author: jfy133

.github/workflows/ci.yml

@@ -103,7 +103,7 @@ jobs:
           nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --mapper 'bowtie2' --bt2_alignmode 'local' --bt2_sensitivity 'sensitive' --bt2n 1 --bt2l 16 --bt2_trim5 1 --bt2_trim3 1
       - name: STRIP_FASTQ Run the basic pipeline with output unmapped reads as fastq
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --strip_input_fastq
+          nextflow run ${GITHUB_WORKSPACE} -profile test_tsv_complex,docker --strip_input_fastq
       - name: BAM_FILTERING Run basic mapping pipeline with mapping quality filtering, and unmapped export
         run: |
           nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --run_bam_filtering --bam_mapping_quality_threshold 37  --bam_unmapped_type 'fastq'

main.nf

@@ -2112,7 +2112,6 @@ if (!params.skip_deduplication) {
 
 } else {
     ch_input_for_skiplibrarymerging.mix(ch_output_from_librarymerging)
-        .view()
         .into { ch_rmdup_for_skipdamagemanipulation; ch_rmdup_for_pmdtools; ch_rmdup_for_bamutils; ch_rmdup_for_bedtools } 
 }