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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -107,7 +107,7 @@ jobs:
107107 nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --clip_adapters_list 'https://github.com/nf-core/test-datasets/raw/eager/databases/adapters/adapter-list.txt'
108108 - name : ADAPTER LIST Run the basic pipeline using an adapter list, skipping adapter removal
109109 run : |
110- nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --clip_adapters_list --skip_adapterremoval 'https://github.com/nf-core/test-datasets/raw/eager/databases/adapters/adapter-list.txt'
110+ nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --clip_adapters_list 'https://github.com/nf-core/test-datasets/raw/eager/databases/adapters/adapter-list.txt' --skip_adapterremoval
111111 - name : MAPPER_CIRCULARMAPPER Test running with CircularMapper
112112 run : |
113113 nextflow run ${GITHUB_WORKSPACE} -profile test_tsv,docker --mapper 'circularmapper' --circulartarget 'NC_007596.2'
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