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Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
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CHANGELOG.md

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@@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
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- [#828](https://github.com/nf-core/eager/issues/828) Improved error message if required metagenomic screening parameters not set correctly
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- [#836](https://github.com/nf-core/eager/issues/836) Remove deprecated parameters from test profiles
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- [#838](https://github.com/nf-core/eager/issues/836) Fix --snpcapture_bed files not being picked up by Nextflow (❤ to @meganemichel for reporting)
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- [#838](https://github.com/nf-core/eager/issues/838) Fix --snpcapture_bed files not being picked up by Nextflow (❤ to @meganemichel for reporting)
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- [#843](https://github.com/nf-core/eager/issues/843) Re-add direct piping of AdapterRemovalFixPrefix to pigz
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- [#844](https://github.com/nf-core/eager/issues/844) Fixed reference masking prior to pmdtools
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- [#845](https://github.com/nf-core/eager/issues/845) Updates parameter documention to specify `-s` preseq parameter also applies to lc_extrap

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