exclude preseq command logs checksums

Author: TCLamnidis

tests/default.nf.test

@@ -56,6 +56,7 @@ nextflow_pipeline {
                 '**/DNA_composition_sample.txt',
                 '**/misincorporation.txt',
                 '**/genome_results.txt',
+                '**/*command.log',
                 ]
 
             // Check that no files are missing/added

tests/default.nf.test.snap

@@ -809,11 +809,8 @@
                 "JK2782_JK2782_TGGCCGATCAACGA_Mammoth_MT_Krause_percent_on_target_mqc.json:md5,c08fbc241b5ccbedc29abd337ac466c2",
                 "JK2802_JK2802_AGAATAACCTACCA_Mammoth_MT_Krause_percent_on_target_mqc.json:md5,3214c6e5713e8208267161acb55aae1d",
                 "JK2782_JK2782_TGGCCGATCAACGA_BAM_Mammoth_MT_Krause.c_curve.txt:md5,ba8059ca2396fb898593c1e66e56a7bc",
-                "JK2782_JK2782_TGGCCGATCAACGA_BAM_Mammoth_MT_Krause.command.log:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "JK2782_JK2782_TGGCCGATCAACGA_Mammoth_MT_Krause.c_curve.txt:md5,6df53f8bbda6fc93242d4d3dae4bd374",
-                "JK2782_JK2782_TGGCCGATCAACGA_Mammoth_MT_Krause.command.log:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "JK2802_JK2802_AGAATAACCTACCA_Mammoth_MT_Krause.c_curve.txt:md5,41c097b474e112a17cf0b913cb23b029",
-                "JK2802_JK2802_AGAATAACCTACCA_Mammoth_MT_Krause.command.log:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "agogo.css:md5,bd757b1a7ce6fdc0288ba148680f4583",
                 "ajax-loader.gif:md5,ae6667053ad118020b8e68ccf307b519",
                 "basic.css:md5,25b2823342c0604924a2870eeb4e7e94",
@@ -893,6 +890,9 @@
                 "edit_distance.pdf",
                 "edit_distance.svg",
                 "misincorporation.txt",
+                "JK2782_JK2782_TGGCCGATCAACGA_BAM_Mammoth_MT_Krause.command.log",
+                "JK2782_JK2782_TGGCCGATCAACGA_Mammoth_MT_Krause.command.log",
+                "JK2802_JK2802_AGAATAACCTACCA_Mammoth_MT_Krause.command.log",
                 "bgfooter.png",
                 "bgtop.png",
                 "comment-bright.png",
@@ -952,8 +952,8 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "24.10.6"
+            "nextflow": "25.04.7"
         },
-        "timestamp": "2025-05-09T10:47:16.368282"
+        "timestamp": "2025-09-12T10:28:33.023588"
     }
 }