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update snapshot
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‎tests/test_long.nf.test.snap‎

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"multiqc_sources.txt",
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"samtools-flagstat-pct-table.txt",
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"samtools-flagstat-table.txt",
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"bcftools-stats-subtypes-pct.pdf",
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"bcftools_stats_indel-lengths-log.pdf",
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"bcftools_stats_variant_depths.pdf",
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"bcftools_stats_vqc_Count_Indels.pdf",
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"bcftools_stats_vqc_Count_SNP.pdf",
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"bcftools_stats_vqc_Count_Transitions.pdf",
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"bcftools_stats_vqc_Count_Transversions.pdf",
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"fastqc_adapter_content_plot.pdf",
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"fastqc_per_base_n_content_plot.pdf",
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"fastqc_per_base_sequence_quality_plot.pdf",
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"fastqc_per_sequence_gc_content_plot_Counts.pdf",
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"fastqc_per_sequence_gc_content_plot_Percentages.pdf",
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"fastqc_per_sequence_quality_scores_plot.pdf",
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"fastqc_sequence_counts_plot-cnt.pdf",
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"fastqc_sequence_counts_plot-pct.pdf",
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"fastqc_sequence_duplication_levels_plot.pdf",
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"fastqc_top_overrepresented_sequences_table.pdf",
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"samtools-flagstat-pct-table.pdf",
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"samtools-flagstat-table.pdf",
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"bcftools-stats-subtypes-cnt.png",
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"bcftools-stats-subtypes-pct.png",
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"bcftools_stats_indel-lengths-cnt.png",
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"bcftools_stats_indel-lengths-log.png",
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"bcftools_stats_variant_depths.png",
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"bcftools_stats_vqc_Count_Indels.png",
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"bcftools_stats_vqc_Count_SNP.png",
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"bcftools_stats_vqc_Count_Transitions.png",
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"bcftools_stats_vqc_Count_Transversions.png",
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"fastqc_adapter_content_plot.png",
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"fastqc_per_base_n_content_plot.png",
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"fastqc_per_base_sequence_quality_plot.png",
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"fastqc_per_sequence_gc_content_plot_Counts.png",
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"fastqc_per_sequence_gc_content_plot_Percentages.png",
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"fastqc_per_sequence_quality_scores_plot.png",
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"fastqc_sequence_counts_plot-cnt.png",
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"fastqc_sequence_counts_plot-pct.png",
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"fastqc_sequence_duplication_levels_plot.png",
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"fastqc_top_overrepresented_sequences_table.png",
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"samtools-flagstat-pct-table.png",
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"samtools-flagstat-table.png",
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"bcftools-stats-subtypes-cnt.svg",
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"bcftools-stats-subtypes-pct.svg",
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"bcftools_stats_indel-lengths-cnt.svg",
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"bcftools_stats_indel-lengths-log.svg",
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"bcftools_stats_variant_depths.svg",
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"bcftools_stats_vqc_Count_Indels.svg",
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"bcftools_stats_vqc_Count_SNP.svg",
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"bcftools_stats_vqc_Count_Transitions.svg",
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"bcftools_stats_vqc_Count_Transversions.svg",
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"fastqc_adapter_content_plot.svg",
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"fastqc_per_base_n_content_plot.svg",
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"fastqc_per_base_sequence_quality_plot.svg",
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"fastqc_per_sequence_gc_content_plot_Counts.svg",
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"fastqc_per_sequence_gc_content_plot_Percentages.svg",
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"fastqc_per_sequence_quality_scores_plot.svg",
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"fastqc_sequence_counts_plot-cnt.svg",
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"fastqc_sequence_counts_plot-pct.svg",
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"fastqc_sequence_duplication_levels_plot.svg",
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"fastqc_top_overrepresented_sequences_table.svg",
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"samtools-flagstat-pct-table.svg",
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"samtools-flagstat-table.svg",
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"multiqc_report.html",
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"JK2782_JK2782_TGGCCGATCAACGA_L1_1_fastqc.html",
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"JK2782_JK2782_TGGCCGATCAACGA_L1_1_fastqc.zip",
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"nf-test": "0.9.2",
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"timestamp": "2025-10-27T12:32:53.766422"
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"timestamp": "2026-01-30T11:53:23.537444"
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},
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"genotyping_vcfs": {
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"content": [
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"multiqc_sources.txt",
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"samtools-flagstat-pct-table.txt",
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"samtools-flagstat-table.txt",
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"bcftools-stats-subtypes-cnt.pdf",
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"bcftools-stats-subtypes-pct.pdf",
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"bcftools_stats_indel-lengths-cnt.pdf",
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"bcftools_stats_indel-lengths-log.pdf",
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"bcftools_stats_variant_depths.pdf",
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"bcftools_stats_vqc_Count_Indels.pdf",
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"bcftools_stats_vqc_Count_SNP.pdf",
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"bcftools_stats_vqc_Count_Transitions.pdf",
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"bcftools_stats_vqc_Count_Transversions.pdf",
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"fastqc_adapter_content_plot.pdf",
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"fastqc_per_base_n_content_plot.pdf",
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"fastqc_per_base_sequence_quality_plot.pdf",
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"fastqc_per_sequence_gc_content_plot_Counts.pdf",
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"fastqc_per_sequence_gc_content_plot_Percentages.pdf",
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"fastqc_per_sequence_quality_scores_plot.pdf",
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"fastqc_sequence_counts_plot-cnt.pdf",
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"fastqc_sequence_counts_plot-pct.pdf",
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"fastqc_sequence_duplication_levels_plot.pdf",
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"fastqc_top_overrepresented_sequences_table.pdf",
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"bcftools-stats-subtypes-cnt.png",
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"bcftools_stats_indel-lengths-log.png",
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"bcftools_stats_variant_depths.png",
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"bcftools_stats_vqc_Count_Indels.png",
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"bcftools_stats_vqc_Count_SNP.png",
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"fastqc_adapter_content_plot.png",
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"fastqc_per_base_sequence_quality_plot.png",
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"fastqc_per_sequence_gc_content_plot_Counts.png",
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"fastqc_per_sequence_gc_content_plot_Percentages.png",
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"fastqc_per_sequence_quality_scores_plot.png",
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"fastqc_sequence_counts_plot-cnt.png",
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"fastqc_sequence_counts_plot-pct.png",
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"fastqc_sequence_duplication_levels_plot.png",
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"fastqc_top_overrepresented_sequences_table.png",
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"samtools-flagstat-pct-table.png",
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"samtools-flagstat-table.png",
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"bcftools-stats-subtypes-cnt.svg",
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"fastqc_top_overrepresented_sequences_table.svg",
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"samtools-flagstat-pct-table.svg",
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"meta": {
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"timestamp": "2025-10-27T12:32:55.413159"
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"timestamp": "2026-01-30T11:53:23.736887"
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},
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"mapping_output": {
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"content": [

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