Merge pull request #82 from nf-core/shh-profile

Started working on SHH profile

Author: apeltzer

conf/shh.config

@@ -0,0 +1,36 @@
+/*
+ * -------------------------------------------------------------
+ *  Nextflow config file for use with Singularity at SHH Clusters
+ * -------------------------------------------------------------
+ * Defines basic usage limits and singularity image id.
+ */
+
+singularity {
+    enabled = true
+}
+
+/*
+* To be improved by process specific resource requests
+* By default, take the medium queue, smaller processes might just go to short (e.g. multiqc or similar things)
+*/
+
+process {
+    executor = 'slurm'
+    queue = 'medium'
+
+    
+    withName:makeFastaIndex {
+        queue = 'short'
+        time = 2.h
+    }
+    withName:makeSeqDict {
+        queue = 'short'
+        time = 2.h
+    }
+}
+
+params {
+  max_memory = 734.GB
+  max_cpus = 64
+  max_time = 48.h
+}

nextflow.config

@@ -62,6 +62,10 @@ profiles {
     includeConfig 'conf/base.config'
     includeConfig 'conf/acad-pheonix.config'
   }
+  shh {
+    includeConfig 'conf/base.config'
+    includeConfig 'conf/shh.config'
+  }
   cfc {
     includeConfig 'conf/base.config'
     includeConfig 'conf/cfc.config'