Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

Author: TCLamnidis

CHANGELOG.md

@@ -3,17 +3,17 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
-## [2.5.0] - 2023-11-01
+## [2.5.0] - Bopfingen - 2023-11-03
 
 ### `Added`
 
-- [#1020](https://github.com/nf-core/eager/issues/1020) Added mapdamage2 as an alternative for damage calculation.
+- [#1020](https://github.com/nf-core/eager/issues/1020) Added mapDamage2 as an alternative for damage calculation.
 
 ### `Fixed`
 
 - [#1017](https://github.com/nf-core/eager/issues/1017) Fixed file name collision in niche cases with multiple libraries of multiple UDG treatments.
 - [#1024](https://github.com/nf-core/eager/issues/1024) `multiqc_general_stats.txt` is now generated even if the table is a beeswarm plot in the report.
-- Updated RG tags for all mappers. RG-id now includes Sample as well as Library ID. Added `LB:` tag with the library ID.
+- [#655](https://github.com/nf-core/eager/issues/655) Updated RG tags for all mappers. RG-id now includes Sample as well as Library ID. Added `LB:` tag with the library ID.
 - [#1031](https://github.com/nf-core/eager/issues/1031) Always index fasta regardless of mapper. This ensures that DamageProfiler and genotyping processes get submitted when using bowtie2 and not providing a fasta index.
 
 ### `Dependencies`

main.nf

@@ -3258,7 +3258,7 @@ process multiqc {
     file ('flagstat_filtered/*') from ch_bam_filtered_flagstat_for_multiqc.collect().ifEmpty([])
     file ('preseq/*') from ch_preseq_for_multiqc.collect().ifEmpty([])
     file ('damageprofiler/dmgprof*/*') from ch_damageprofiler_results.collect().ifEmpty([])
-    file ('mapdamage/*') from ch_mapdamage_for_multiqc.collect().ifEmpty([]).dump(tag:'ch_mapdamage_for_multiqc')
+    file ('mapdamage/*') from ch_mapdamage_for_multiqc.collect().ifEmpty([])
     file ('qualimap/qualimap*/*') from ch_qualimap_results.collect().ifEmpty([])
     file ('markdup/*') from ch_markdup_results_for_multiqc.collect().ifEmpty([])
     file ('dedup*/*') from ch_dedup_results_for_multiqc.collect().ifEmpty([])