bump version

Author: TCLamnidis

.github/workflows/ci.yml

@@ -41,13 +41,13 @@ jobs:
 
       - name: Build new docker image
         if: env.MATCHED_FILES
-        run: docker build --no-cache . -t nfcore/eager:2.5.3
+        run: docker build --no-cache . -t nfcore/eager:2.5.4
 
       - name: Pull docker image
         if: ${{ !env.MATCHED_FILES }}
         run: |
           docker pull nfcore/eager:dev
-          docker tag nfcore/eager:dev nfcore/eager:2.5.3
+          docker tag nfcore/eager:dev nfcore/eager:2.5.4
       - name: Install Nextflow
         env:
           CAPSULE_LOG: none
@@ -222,4 +222,4 @@ jobs:
           nextflow run ${GITHUB_WORKSPACE} -profile test_tsv_humanbam,docker --skip_fastqc --skip_adapterremoval --skip_deduplication --skip_qualimap --skip_preseq --skip_damage_calculation --run_mtnucratio
       - name: RESCALING Run basic pipeline with basic pipeline but with mapDamage rescaling of BAM files. Note this will be slow
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test,docker --run_mapdamage_rescaling --run_genotyping --genotyping_tool hc --genotyping_source 'rescaled'
+          nextflow run ${GITHUB_WORKSPACE} -profile test,docker --run_mapdamage_rescaling --run_genotyping --genotyping_tool hc --genotyping_source 'rescaled'

Dockerfile

@@ -7,7 +7,7 @@ COPY environment.yml /
 RUN conda env create --quiet -f /environment.yml && conda clean -a
 
 # Add conda installation dir to PATH (instead of doing 'conda activate')
-ENV PATH /opt/conda/envs/nf-core-eager-2.5.3/bin:$PATH
+ENV PATH /opt/conda/envs/nf-core-eager-2.5.4/bin:$PATH
 
 # Dump the details of the installed packages to a file for posterity
-RUN conda env export --name nf-core-eager-2.5.3 > nf-core-eager-2.5.3.yml
+RUN conda env export --name nf-core-eager-2.5.4 > nf-core-eager-2.5.4.yml

environment.yml

@@ -1,6 +1,6 @@
 # You can use this file to create a conda environment for this pipeline:
 #   conda env create -f environment.yml
-name: nf-core-eager-2.5.3
+name: nf-core-eager-2.5.4
 channels:
   - conda-forge
   - bioconda

nextflow.config

@@ -289,7 +289,7 @@ params {
 
 // Container slug. Stable releases should specify release tag!
 // Developmental code should specify :dev
-process.container = 'nfcore/eager:2.5.3'
+process.container = 'nfcore/eager:2.5.4'
 
 // Load base.config by default for all pipelines
 includeConfig 'conf/base.config'
@@ -419,7 +419,7 @@ manifest {
   description = 'A fully reproducible and state-of-the-art ancient DNA analysis pipeline'
   mainScript = 'main.nf'
   nextflowVersion = '>=20.07.1'
-  version = '2.5.3'
+  version = '2.5.4'
 }
 
 // Function to ensure that resource requirements don't go beyond