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Merge branch 'patch' of github.com:nf-core/eager into patch
2 parents 2f6021f + 5ded067 commit 72fcc1a

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.github/workflows/ci.yml

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@@ -23,7 +23,7 @@ jobs:
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strategy:
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matrix:
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# Nextflow versions: check pipeline minimum and current latest
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nxf_ver: ['20.07.1', '']
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nxf_ver: ['20.07.1', '22.10.6']
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steps:
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- name: Check out pipeline code
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uses: actions/checkout@v2
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nextflow run ${GITHUB_WORKSPACE} -profile test_tsv_humanbam,docker --skip_fastqc --skip_adapterremoval --skip_deduplication --skip_qualimap --skip_preseq --skip_damage_calculation --run_mtnucratio
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- name: RESCALING Run basic pipeline with basic pipeline but with mapDamage rescaling of BAM files. Note this will be slow
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run: |
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nextflow run ${GITHUB_WORKSPACE} -profile test,docker --run_mapdamage_rescaling --run_genotyping --genotyping_tool hc --genotyping_source 'rescaled'
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nextflow run ${GITHUB_WORKSPACE} -profile test,docker --run_mapdamage_rescaling --run_genotyping --genotyping_tool hc --genotyping_source 'rescaled'

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