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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 2323 strategy :
2424 matrix :
2525 # Nextflow versions: check pipeline minimum and current latest
26- nxf_ver : ['20.07.1', '']
26+ nxf_ver : ['20.07.1', '22.10.6 ']
2727 steps :
2828 - name : Check out pipeline code
2929 uses : actions/checkout@v2
@@ -216,4 +216,4 @@ jobs:
216216 nextflow run ${GITHUB_WORKSPACE} -profile test_tsv_humanbam,docker --skip_fastqc --skip_adapterremoval --skip_deduplication --skip_qualimap --skip_preseq --skip_damage_calculation --run_mtnucratio
217217 - name : RESCALING Run basic pipeline with basic pipeline but with mapDamage rescaling of BAM files. Note this will be slow
218218 run : |
219- nextflow run ${GITHUB_WORKSPACE} -profile test,docker --run_mapdamage_rescaling --run_genotyping --genotyping_tool hc --genotyping_source 'rescaled'
219+ nextflow run ${GITHUB_WORKSPACE} -profile test,docker --run_mapdamage_rescaling --run_genotyping --genotyping_tool hc --genotyping_source 'rescaled'
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