Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Co-authored-by: Ian Light-Maka <86308592+ilight1542@users.noreply.github.com>

Author: 3 people

assets/schema_input.json

@@ -79,7 +79,7 @@
                 "format": "file-path",
                 "pattern": "^\\S+\\.vcf.gz$",
                 "exists": true,
-                "errorMessage": "VCFs files cannot contain any spaces and must have extension '.vcf.gz' and be gzip zipped."
+                "errorMessage": "VCFs files cannot contain any spaces and must have extension '.vcf.gz' and be gzip compressed."
             },
             "vcf_reference_id": {
                 "type": "string",

conf/test.config

@@ -65,7 +65,7 @@ params {
     metagenomics_run_postprocessing = true
 
     // Consensus sequence generation
-    run_consensus_sequence          = true
-    consensus_tool                 = 'multivcfanalyzer'
+    run_consensus_sequence                              = true
+    consensus_tool                                      = 'multivcfanalyzer'
     consensus_multivcfanalyzer_write_allele_frequencies = true
 }

nextflow_schema.json

@@ -1612,12 +1612,12 @@
                     "type": "boolean",
                     "description": "Specify to create consensus sequence from VCF files",
                     "fa_icon": "fas fa-power-off",
-                    "help_text": "Specify to create consensus sequence from VCF files."
+                    "help_text": "Utilize reference genome and generated VCF files to create consensus sequence at set quality thresholds."
                 },
                 "consensus_tool": {
                     "type": "string",
                     "fa_icon": "fas fa-hammer",
-                    "description": "Speficy which tool to use to create consensus sequences: multivcfanalyzer, gencons",
+                    "description": "Specify which tool to use to create consensus sequences: multivcfanalyzer, gencons",
                     "enum": ["multivcfanalyzer", "gencons"],
                     "help_text": "Specify the tool to create the consensus sequence. Accepted values: multivcfanalyzer, gencons.\n\nNote: These tools currently only supports diploid GATK UnifiedGenotyper vcfs as input."
                 },