fix error in modules.config

TCLamnidis · TCLamnidis · commit 8d0383d74c5f · 2025-09-16T12:38:30.000+02:00
diff --git a/conf/modules.config b/conf/modules.config
@@ -1698,9 +1698,9 @@ process {
                 [
                     ref_meta.ploidy ? "-p ${ref_meta.ploidy}" : '',
                     "-C ${params.genotyping_freebayes_min_alternate_count}",
-                    { params.genotyping_freebayes_skip_coverage == 0 ? "" : "-g ${params.genotyping_freebayes_skip_coverage}" },
-                ]
-            }.join(' ').trim()
+                    params.genotyping_freebayes_skip_coverage == 0 ? "" : "-g ${params.genotyping_freebayes_skip_coverage}",
+                ].join(' ').trim()
+            }
         }
         ext.prefix = { "${meta.sample_id}_${meta.reference}" }
         publishDir = [

Original file line number	Diff line number	Diff line change
`@@ -1698,9 +1698,9 @@ process {`
`1698`	`1698`	`[`
`1699`	`1699`	`ref_meta.ploidy ? "-p ${ref_meta.ploidy}" : '',`
`1700`	`1700`	`"-C ${params.genotyping_freebayes_min_alternate_count}",`
`1701`		`- { params.genotyping_freebayes_skip_coverage == 0 ? "" : "-g ${params.genotyping_freebayes_skip_coverage}" },`
`1702`		`- ]`
`1703`		`- }.join(' ').trim()`
	`1701`	`+ params.genotyping_freebayes_skip_coverage == 0 ? "" : "-g ${params.genotyping_freebayes_skip_coverage}",`
	`1702`	`+ ].join(' ').trim()`
	`1703`	`+ }`
`1704`	`1704`	`}`
`1705`	`1705`	`ext.prefix = { "${meta.sample_id}_${meta.reference}" }`
`1706`	`1706`	`publishDir = [`