Merge pull request #1113 from nf-core/dsl2-metagenomics-testdata

merszym · web-flow · commit 931c803a91dd · 2025-03-25T13:32:01.000+01:00
Update Metagenomics Test-Datasets
diff --git a/conf/test_krakenuniq.config b/conf/test_krakenuniq.config
@@ -32,5 +32,5 @@ params {
     // Metagenomics
     run_metagenomics                = true
     metagenomics_profiling_tool     = 'krakenuniq'
-    metagenomics_profiling_database = params.pipelines_testdata_base_path + 'eager/databases/krakenuniq/testdb-krakenuniq.tar.gz'
+    metagenomics_profiling_database = params.pipelines_testdata_base_path + 'eager/databases/krakenuniq/eager3-mammoth-minimal.tar.gz'
 }
diff --git a/conf/test_metaphlan.config b/conf/test_metaphlan.config
@@ -24,7 +24,7 @@ params {
     config_profile_description      = 'Minimal test dataset to check the metagenomics metaphlan4 pipeline function'
 
     // Input data
-    input                           = params.pipelines_testdata_base_path + 'eager/testdata/Mammoth/samplesheet_v3.tsv'
+    input                           = params.pipelines_testdata_base_path + 'eager/testdata/Mammoth/samplesheet_v3_TOYMETAPHLAN.csv'
 
     // Genome references
     fasta                           = params.pipelines_testdata_base_path + 'eager/reference/Mammoth/Mammoth_MT_Krause.fasta'

Original file line number	Diff line number	Diff line change
`@@ -32,5 +32,5 @@ params {`
`32`	`32`	`// Metagenomics`
`33`	`33`	`run_metagenomics = true`
`34`	`34`	`metagenomics_profiling_tool = 'krakenuniq'`
`35`		`- metagenomics_profiling_database = params.pipelines_testdata_base_path + 'eager/databases/krakenuniq/testdb-krakenuniq.tar.gz'`
	`35`	`+ metagenomics_profiling_database = params.pipelines_testdata_base_path + 'eager/databases/krakenuniq/eager3-mammoth-minimal.tar.gz'`
`36`	`36`	`}`