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1 parent 7331f22 commit 990140cCopy full SHA for 990140c
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main.nf
@@ -60,7 +60,7 @@ def helpMessage() {
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--clip_readlength Specify read minimum length to be kept for downstream analysis
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--clip_min_read_quality Specify minimum base quality for not trimming off bases
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--min_adap_overlap Specify minimum adapter overlap
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- --skip_collapse Skip merging Forward and Reverse reads together. (Only for PE samples)
+ --skip_collapse Skip merging forward and reverse reads together. (Only for PE samples)
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--skip_trim Skip adaptor and quality trimming
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BWA Mapping
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