remove channel dump calls

Author: TCLamnidis

subworkflows/local/utils_nfcore_eager_pipeline/main.nf

@@ -123,7 +123,6 @@ workflow PIPELINE_INITIALISATION {
                                         reads = meta.single_end ? [ r1 ] : [ r1, r2 ]
                                     [ meta - meta.subMap('pairment', 'bam_reference_id'), reads ]
                                 }
-                                .dump(tag:"fastq_samplesheet")
 
     ch_samplesheet_bams = ch_samplesheet_for_branch.bam
                             .map {
@@ -132,7 +131,6 @@ workflow PIPELINE_INITIALISATION {
                                     meta.id_index = meta.bam_reference_id
                                 [ meta - meta.subMap('pairment', 'bam_reference_id'), bam ]
                             }
-                            .dump(tag:"bams_samplesheet")
 
     ch_samplesheet_vcfs = ch_samplesheet_for_branch.vcf
                             .map {
@@ -141,8 +139,6 @@ workflow PIPELINE_INITIALISATION {
                                     meta.id_index = meta.vcf_reference_id
                                 [ meta - meta.subMap('pairment', 'vcf_reference_id'), vcf ]
                             }
-                            .dump(tag: "additional_vcfs_samplesheet")
-
 
     // Extra validation
     // - Only paired end specified when R2 provided