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Replace minimal test data with mammoth mt data to run faster
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Lines changed: 3 additions & 3 deletions

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conf/test_minimal.config

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -14,7 +14,7 @@ process {
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resourceLimits = [
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cpus: 4,
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memory: '15.GB',
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time: '1.h'
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time: '1.h',
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]
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}
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@@ -25,10 +25,10 @@ params {
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// Input data
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// TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
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// TODO nf-core: Give any required params for the test so that command line flags are not needed
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input = params.pipelines_testdata_base_path + 'eager/testdata/Human/human_design_bam_eager3.tsv'
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input = params.pipelines_testdata_base_path + 'eager/testdata/Mammoth/samplesheet_v3.tsv'
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// Genome references
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fasta = params.pipelines_testdata_base_path + 'eager/reference/Human/hs37d5_chr21-MT.fa.gz'
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fasta = params.pipelines_testdata_base_path + 'eager/reference/Mammoth/Mammoth_MT_Krause.fasta'
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skip_preprocessing = true
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skip_deduplication = true

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