limit fastqc cores so each one gets more memory

TCLamnidis · TCLamnidis · commit a295a14d6ec3 · 2025-09-26T11:19:43.000+02:00
diff --git a/conf/test_full.config b/conf/test_full.config
@@ -37,6 +37,7 @@ params {
 
 process {
     withName: fastqc {
+        cpus   = { check_max(1, 'cpus') }
         memory = { check_max(16.GB * task.attempt, 'memory') }
     }
     withName: adapter_removal {

Original file line number	Diff line number	Diff line change
`@@ -37,6 +37,7 @@ params {`
`37`	`37`
`38`	`38`	`process {`
`39`	`39`	`withName: fastqc {`
	`40`	`+ cpus = { check_max(1, 'cpus') }`
`40`	`41`	`memory = { check_max(16.GB * task.attempt, 'memory') }`
`41`	`42`	`}`
`42`	`43`	`withName: adapter_removal {`