Merge pull request #629 from jfy133/dev

Fix dockerhub issue

Author: apeltzer

.github/workflows/ci.yml

@@ -186,34 +186,3 @@ jobs:
       - name: MTNUCRATIO Run basic pipeline with bam input profile, but don't convert BAM, skip everything but nmtnucratio
         run: |
           nextflow run ${GITHUB_WORKSPACE} -profile test_tsv_humanbam,docker --skip_fastqc --skip_adapterremoval --skip_deduplication --skip_qualimap --skip_preseq --skip_damage_calculation --run_mtnucratio
-  
-  push_dockerhub:
-    name: Push new Docker image to Docker Hub
-    runs-on: ubuntu-latest
-    # Only run if the tests passed
-    needs: test
-    # Only run for the nf-core repo, for releases and merged PRs
-    if: ${{ github.repository == 'nf-core/eager' && (github.event_name == 'release' || github.event_name == 'push') }}
-    env:
-      DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }}
-      DOCKERHUB_PASS: ${{ secrets.DOCKERHUB_PASS }}
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@v2
-
-      - name: Build new docker image
-        run: docker build --no-cache . -t nfcore/eager:latest
-
-      - name: Push Docker image to DockerHub (dev)
-        if: ${{ github.event_name == 'push' }}
-        run: |
-          echo "$DOCKERHUB_PASS" | docker login -u "$DOCKERHUB_USERNAME" --password-stdin
-          docker tag nfcore/eager:latest nfcore/eager:dev
-          docker push nfcore/eager:dev
-      - name: Push Docker image to DockerHub (release)
-        if: ${{ github.event_name == 'release' }}
-        run: |
-          echo "$DOCKERHUB_PASS" | docker login -u "$DOCKERHUB_USERNAME" --password-stdin
-          docker push nfcore/eager:latest
-          docker tag nfcore/eager:latest nfcore/eager:${{ github.ref }}
-          docker push nfcore/eager:${{ github.ref }}

CHANGELOG.md

@@ -3,6 +3,19 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [dev] - Unreleased
+
+### `Added`
+
+### `Fixed`
+
+- Removed leftover old DockerHub push CI commands.
+- [#627](https://github.com/nf-core/eager/issues/627) Added de Barros Damgaard citation to README
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## [2.2.2] - 2020-12-09
 
 ### `Added`

README.md

@@ -244,3 +244,4 @@ This repository uses test data from the following studies:
 * Fellows Yates, J. A. et al. (2017) ‘Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes’, Scientific reports, 7(1), p. 17714. [doi: 10.1038/s41598-017-17723-1](https://doi.org/10.1038/s41598-017-17723-1).
 * Gamba, C. et al. (2014) ‘Genome flux and stasis in a five millennium transect of European prehistory’, Nature communications, 5, p. 5257. [doi: 10.1038/ncomms6257](https://doi.org/10.1038/ncomms6257).
 * Star, B. et al. (2017) ‘Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany’, Proceedings of the National Academy of Sciences of the United States of America, 114(34), pp. 9152–9157. [doi: 10.1073/pnas.1710186114](https://doi.org/10.1073/pnas.1710186114).
+* de Barros Damgaard, P. et al. (2018). '137 ancient human genomes from across the Eurasian steppes.', Nature, 557(7705), 369–374. [doi: 10.1038/s41586-018-0094-2](https://doi.org/10.1038/s41586-018-0094-2)