Add sane defaults for BWA mem

apeltzer · apeltzer · commit befd631af97a · 2018-12-18T09:58:44.000+01:00
diff --git a/conf/base.config b/conf/base.config
@@ -34,6 +34,11 @@ process {
     cpus = { check_max(8 * task.attempt, 'cpus') }
     time = { check_max(8.h * task.attempt, 'time') }
   }
+  withName:bwamem{
+    memory = { check_max( 16.GB * task.attempt, 'memory' ) }
+    cpus = { check_max(8 * task.attempt, 'cpus') }
+    time = { check_max(8.h * task.attempt, 'time') }
+  }
   withName:preseq {
     errorStrategy = 'ignore'
   }

Original file line number	Diff line number	Diff line change
`@@ -34,6 +34,11 @@ process {`
`34`	`34`	`cpus = { check_max(8 * task.attempt, 'cpus') }`
`35`	`35`	`time = { check_max(8.h * task.attempt, 'time') }`
`36`	`36`	`}`
	`37`	`+ withName:bwamem{`
	`38`	`+ memory = { check_max( 16.GB * task.attempt, 'memory' ) }`
	`39`	`+ cpus = { check_max(8 * task.attempt, 'cpus') }`
	`40`	`+ time = { check_max(8.h * task.attempt, 'time') }`
	`41`	`+ }`
`37`	`42`	`withName:preseq {`
`38`	`43`	`errorStrategy = 'ignore'`
`39`	`44`	`}`