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Add to modules.config
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conf/modules.config

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@@ -1846,4 +1846,19 @@ process {
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]
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]
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}
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//
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// mtDNA haplogroup classification
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//
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withName: HAPLOGREP3_CLASSIFY_MTDNA {
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tag = { "${meta.reference}|${meta.sample_id}" }
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ext.prefix = { "${meta.sample_id}_${meta.reference}" }
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publishDir = [
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[
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path: { "${params.outdir}/mtdna_haplogroup/${meta.reference}/${meta.sample_id}" },
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mode: params.publish_dir_mode,
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saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
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]
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]
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}
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//
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}

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