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Update nextflow_schema.json
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nextflow_schema.json

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"type": "boolean",
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"description": "Turn on to remove reads that did not map to the circularised genome (circularmapper only).",
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"fa_icon": "fas fa-filter",
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"help_text": "If you want to filter out reads that don't map to a circular chromosome, turn this on. By default this option is turned off.\n"
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"help_text": "If you want to filter out reads that don't map to a circular chromosome (and also non-circular chromosome headers) from the resulting BAM file, turn this on. By default this option is turned off.\n> Modifies -f and -x parameters of CircularMapper's realignsamfile\n"
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},
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"bt2_alignmode": {
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"type": "string",

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