bump versions

Author: jfy133

.github/workflows/ci.yml

@@ -37,13 +37,13 @@ jobs:
 
       - name: Build new docker image
         if: env.MATCHED_FILES
-        run: docker build --no-cache . -t nfcore/eager:2.4.6
+        run: docker build --no-cache . -t nfcore/eager:2.4.7
 
       - name: Pull docker image
         if: ${{ !env.MATCHED_FILES }}
         run: |
           docker pull nfcore/eager:dev
-          docker tag nfcore/eager:dev nfcore/eager:2.4.6
+          docker tag nfcore/eager:dev nfcore/eager:2.4.7
 
       - name: Install Nextflow
         env:

CHANGELOG.md

@@ -3,12 +3,20 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
-## [2.4.7] - 2023-05-16
+## [2.4.7dev] - 
+
+### `Added`
 
 ### `Fixed`
 
 - [#983](https://github.com/nf-core/eager/issues/983) Bump `pygments` version due to incompatibility with MultiQC dependencies (♥ to @MinLuke for reporting)
 
+### `Dependencies`
+
+- `pygments`: 2.9 -> 2.14
+
+### `Deprecated`
+
 ## [2.4.6] - 2022-11-14
 
 ### `Added`

Dockerfile

@@ -7,7 +7,7 @@ COPY environment.yml /
 RUN conda env create --quiet -f /environment.yml && conda clean -a
 
 # Add conda installation dir to PATH (instead of doing 'conda activate')
-ENV PATH /opt/conda/envs/nf-core-eager-2.4.6/bin:$PATH
+ENV PATH /opt/conda/envs/nf-core-eager-2.4.7/bin:$PATH
 
 # Dump the details of the installed packages to a file for posterity
-RUN conda env export --name nf-core-eager-2.4.6 > nf-core-eager-2.4.6.yml
+RUN conda env export --name nf-core-eager-2.4.7 > nf-core-eager-2.4.7.yml

environment.yml

@@ -1,6 +1,6 @@
 # You can use this file to create a conda environment for this pipeline:
 #   conda env create -f environment.yml
-name: nf-core-eager-2.4.6
+name: nf-core-eager-2.4.7
 channels:
   - conda-forge
   - bioconda
@@ -50,4 +50,4 @@ dependencies:
   - bioconda::eigenstratdatabasetools=1.0.2
   - bioconda::mapdamage2=2.2.1
   - bioconda::bbmap=38.92
-  - bioconda::bcftools=1.12
+  - bioconda::bcftools=1.12

nextflow.config

@@ -285,7 +285,7 @@ params {
 
 // Container slug. Stable releases should specify release tag!
 // Developmental code should specify :dev
-process.container = 'nfcore/eager:2.4.6'
+process.container = 'nfcore/eager:2.4.7'
 
 // Load base.config by default for all pipelines
 includeConfig 'conf/base.config'
@@ -415,7 +415,7 @@ manifest {
   description = 'A fully reproducible and state-of-the-art ancient DNA analysis pipeline'
   mainScript = 'main.nf'
   nextflowVersion = '>=20.07.1'
-  version = '2.4.6'
+  version = '2.4.7'
 }
 
 // Function to ensure that resource requirements don't go beyond